Variant report

Variant	rs2414483
Chromosome Location	chr15:57042064-57042065
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12904421	1.00[AFR][1000 genomes]
rs1621520	1.00[AFR][1000 genomes]
rs1642934	1.00[AFR][1000 genomes]
rs1647375	1.00[AFR][1000 genomes]
rs1647393	1.00[AFR][1000 genomes]
rs1657931	1.00[AFR][1000 genomes]
rs1660947	1.00[AFR][1000 genomes]
rs1660949	1.00[AFR][1000 genomes]
rs169892	1.00[AFR][1000 genomes]
rs7162654	1.00[AFR][1000 genomes]
rs933765	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57040800-57043400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr15:57041600-57042800	Enhancers	Osteobl	bone
3	chr15:57041800-57042600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr15:57041800-57042600	Enhancers	Adipose Nuclei	Adipose
5	chr15:57041800-57042600	Enhancers	Ovary	ovary
6	chr15:57041800-57042800	Enhancers	Liver	Liver
7	chr15:57041800-57043200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:57042000-57042800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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