Variant report

Variant	rs162394
Chromosome Location	chr21:44943550-44943551
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:44942860..44944768-chr21:44951008..44952674,2	MCF-7	breast:

Extended variants
information (count: 174 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:161)

rs_ID	r²[population]
rs1003280	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs1041455	0.87[LWK][hapmap]
rs1073522	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1122873	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11700909	0.82[TSI][hapmap]
rs11701518	0.87[CHB][hapmap]
rs11909064	0.80[JPT][hapmap]
rs12165286	0.84[YRI][hapmap]
rs12626757	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12627667	0.85[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs1378079	0.85[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.92[GIH][hapmap];0.82[JPT][hapmap];0.83[TSI][hapmap];0.97[ASN][1000 genomes]
rs1378080	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.97[ASN][1000 genomes]
rs141521	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.85[MEX][hapmap];0.81[TSI][hapmap];0.99[ASN][1000 genomes]
rs1454648	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs1454650	0.93[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1454651	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1584917	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1584918	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1598206	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.85[MEX][hapmap];0.83[TSI][hapmap];0.85[ASN][1000 genomes]
rs162343	0.92[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs162344	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.93[JPT][hapmap];0.85[MEX][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs162345	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs162366	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs162367	0.82[CEU][hapmap];0.86[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];0.87[JPT][hapmap];0.85[MEX][hapmap];0.93[ASN][1000 genomes]
rs162368	0.97[ASN][1000 genomes]
rs162369	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs162371	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs162372	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs162373	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs162374	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs162375	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs162376	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs162377	0.93[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs162378	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs162379	0.85[CEU][hapmap]
rs162380	0.86[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs162381	0.86[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs162388	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs162389	0.97[ASN][1000 genomes]
rs162390	0.86[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs162391	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs162392	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs162393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs162395	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs162396	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs162398	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.93[JPT][hapmap];0.85[MEX][hapmap];0.83[TSI][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs162399	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs162400	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs162401	0.80[EUR][1000 genomes]
rs162402	0.99[ASN][1000 genomes]
rs162403	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs162404	0.97[ASN][1000 genomes]
rs167930	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1836856	0.87[CHB][hapmap]
rs189094	0.98[ASN][1000 genomes]
rs2051407	0.82[ASN][1000 genomes]
rs2070533	0.82[TSI][hapmap]
rs2155722	0.82[CHD][hapmap];0.80[JPT][hapmap];0.82[TSI][hapmap]
rs2236666	0.80[JPT][hapmap]
rs2246602	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.85[ASN][1000 genomes]
rs2250773	0.80[JPT][hapmap]
rs2251253	0.80[JPT][hapmap]
rs229340	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs229357	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2298561	0.80[JPT][hapmap]
rs230640	0.86[CHB][hapmap];0.93[JPT][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs230642	1.00[ASW][hapmap];0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.93[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs230643	0.91[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs230644	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs230645	0.92[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs230646	0.92[CEU][hapmap];0.86[CHB][hapmap];0.93[GIH][hapmap];0.93[JPT][hapmap];0.85[MEX][hapmap];0.81[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs230647	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2329442	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.94[LWK][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2329443	0.84[ASN][1000 genomes]
rs2838316	0.87[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.93[JPT][hapmap];0.97[LWK][hapmap];0.94[MEX][hapmap];0.81[TSI][hapmap];0.95[YRI][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2838317	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs2838318	0.89[CEU][hapmap];0.81[CHB][hapmap]
rs2838319	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs2838320	1.00[ASW][hapmap];0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[GIH][hapmap];0.88[LWK][hapmap];0.98[TSI][hapmap];0.95[YRI][hapmap];0.91[EUR][1000 genomes]
rs2838321	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs2838322	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2838323	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2838324	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2838325	0.85[CEU][hapmap];0.81[CHB][hapmap]
rs2838326	0.85[CEU][hapmap];0.81[CHB][hapmap]
rs2838328	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs2838329	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2838330	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs2838331	0.87[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.94[LWK][hapmap];0.94[MEX][hapmap];0.81[TSI][hapmap];0.82[YRI][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2838336	0.85[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.88[JPT][hapmap];0.85[MEX][hapmap];0.82[ASN][1000 genomes]
rs2838337	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.83[ASN][1000 genomes]
rs2838338	0.92[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.92[GIH][hapmap];0.88[JPT][hapmap];0.94[MEX][hapmap];0.83[TSI][hapmap];0.81[ASN][1000 genomes]
rs2838339	0.87[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.88[JPT][hapmap];0.97[LWK][hapmap];0.94[MEX][hapmap];0.83[TSI][hapmap];0.95[YRI][hapmap];0.82[ASN][1000 genomes]
rs2838340	0.85[CEU][hapmap];0.81[CHB][hapmap]
rs2838341	0.85[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.85[MEX][hapmap];0.82[ASN][1000 genomes]
rs2838342	0.80[ASN][1000 genomes]
rs2838343	0.85[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs2838344	0.82[CHD][hapmap];0.80[JPT][hapmap]
rs2838348	0.80[JPT][hapmap]
rs2838350	0.80[JPT][hapmap]
rs2838351	0.80[JPT][hapmap]
rs28840140	0.95[ASN][1000 genomes]
rs35110281	0.82[ASN][1000 genomes]
rs3788062	1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs3819161	0.82[CHD][hapmap];0.80[JPT][hapmap]
rs389278	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs463738	0.91[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4818833	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4818843	0.96[ASN][1000 genomes]
rs4818850	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs4818856	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4818858	0.82[CHD][hapmap];0.80[JPT][hapmap];0.84[TSI][hapmap]
rs4818859	0.81[CEU][hapmap];0.82[TSI][hapmap]
rs4819212	0.87[CHB][hapmap]
rs4819219	0.87[CHB][hapmap];0.95[YRI][hapmap]
rs4819264	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4819270	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4819285	0.82[TSI][hapmap]
rs4819288	0.82[TSI][hapmap]
rs4819289	0.82[TSI][hapmap]
rs4997353	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58451308	0.82[ASN][1000 genomes]
rs6417729	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6518301	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs6518302	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.97[LWK][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.95[YRI][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6518309	0.81[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6518310	0.80[JPT][hapmap]
rs7275705	0.85[ASN][1000 genomes]
rs7276215	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7276316	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7276633	0.81[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap];0.88[JPT][hapmap];0.81[MEX][hapmap]
rs7277539	1.00[ASW][hapmap];0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.93[JPT][hapmap];0.94[LWK][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.82[YRI][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7278003	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7279958	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs7279959	0.86[CHB][hapmap]
rs7279968	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs7282122	0.80[JPT][hapmap]
rs7282933	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7283362	0.87[CHB][hapmap];0.84[CHD][hapmap]
rs762400	0.82[CHD][hapmap];0.80[JPT][hapmap];0.84[TSI][hapmap]
rs8131005	0.85[CEU][hapmap];0.81[CHB][hapmap]
rs8131020	0.87[CHB][hapmap];0.84[CHD][hapmap]
rs8133523	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap]
rs86138	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs86139	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs91424	0.86[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs9306159	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs9974710	0.84[ASN][1000 genomes]
rs9976441	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs9976443	0.82[ASN][1000 genomes]
rs9977258	0.80[AFR][1000 genomes]
rs9978811	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9978934	0.90[YRI][hapmap]
rs9979935	0.91[YRI][hapmap]
rs9980185	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.81[LWK][hapmap];0.89[MEX][hapmap];0.81[TSI][hapmap];0.85[ASN][1000 genomes]
rs9981291	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.91[LWK][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9981790	0.86[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs9983752	0.94[LWK][hapmap];0.95[YRI][hapmap]
rs9983763	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.81[TSI][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9984002	0.87[ASW][hapmap];0.81[CEU][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.83[TSI][hapmap];0.85[ASN][1000 genomes]
rs9984724	0.81[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057726	chr21:44711850-44957303	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
2	nsv544466	chr21:44711850-44957303	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
3	nsv913868	chr21:44835508-44954522	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
4	esv1839560	chr21:44864079-44973184	Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
5	nsv913873	chr21:44879869-45142427	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
6	nsv587689	chr21:44884252-44986050	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
7	nsv1059264	chr21:44895863-44944515	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv1061539	chr21:44915533-45041824	Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
9	nsv1067171	chr21:44921187-45039471	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
10	nsv521700	chr21:44925334-45041790	Enhancers Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
11	nsv470903	chr21:44925334-45061501	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
12	nsv459289	chr21:44925334-45064600	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
13	nsv587690	chr21:44925334-45064600	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs162394	DNMT3L	cis	cerebellum	SCAN
rs162394	HSF2BP	cis	Lymphoblastoid	GTEx
rs162394	NCRNA00175	cis	parietal	SCAN
rs162394	HSF2BP	cis	lymphoblastoid	seeQTL
rs162394	HSF2BP	cis	multi-tissue	Pritchard
rs162394	COL18A1	cis	cerebellum	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:44929800-44943600	Enhancers	HMEC	breast
2	chr21:44937400-44946000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr21:44937600-44943600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr21:44938600-44945400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr21:44938600-44946000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr21:44940400-44945400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr21:44940400-44945400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr21:44940400-44946000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr21:44941000-44945400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr21:44941000-44949400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr21:44942600-44945600	Enhancers	HepG2	liver
12	chr21:44942800-44945400	Weak transcription	HSMMtube	muscle
13	chr21:44943000-44947800	Weak transcription	HSMM	muscle
14	chr21:44943000-44949400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr21:44943400-44945200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr21:44943400-44945400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr21:44943400-44947600	Weak transcription	NHEK	skin
18	chr21:44943400-44949000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr21:44943400-44956800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links