Variant report

Variant	rs162411
Chromosome Location	chr3:21583320-21583321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:21558303..21559979-chr3:21581048..21584024,2	K562	blood:
2	chr3:21572284..21575106-chr3:21582629..21584216,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10510513	0.95[JPT][hapmap]
rs11129007	0.91[JPT][hapmap]
rs13317601	0.85[JPT][hapmap]
rs1457590	0.81[JPT][hapmap]
rs149267	0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs151276	0.90[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs162412	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs162413	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs162414	0.91[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs162415	0.90[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs163482	0.85[JPT][hapmap];0.82[AMR][1000 genomes]
rs192058	0.91[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs1978516	0.81[JPT][hapmap]
rs2059400	0.95[JPT][hapmap]
rs233142	0.90[JPT][hapmap]
rs233143	0.94[JPT][hapmap];0.82[AMR][1000 genomes]
rs233146	0.90[JPT][hapmap]
rs233147	0.90[JPT][hapmap]
rs233150	0.91[JPT][hapmap];0.81[AMR][1000 genomes]
rs233151	0.81[AMR][1000 genomes]
rs233153	0.91[JPT][hapmap]
rs233156	0.86[JPT][hapmap];0.80[AMR][1000 genomes]
rs233157	0.86[JPT][hapmap]
rs3860578	0.95[JPT][hapmap]
rs4858328	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4858329	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6789053	0.95[JPT][hapmap]
rs7615120	0.95[JPT][hapmap]
rs7637649	0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs7642500	0.91[JPT][hapmap]
rs7646837	0.95[JPT][hapmap]
rs9310647	0.81[JPT][hapmap]
rs9310648	0.85[JPT][hapmap]
rs9310649	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs9810352	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9829496	0.90[JPT][hapmap]
rs9862072	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006471	chr3:21385627-21596955	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21561800-21587800	Weak transcription	Aorta	Aorta
2	chr3:21566600-21585400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:21574000-21602000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:21574800-21584000	Weak transcription	K562	blood
5	chr3:21580800-21584200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:21582000-21584800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:21582400-21585600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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