Variant report

Variant	rs7637649
Chromosome Location	chr3:21566454-21566455
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:21565324..21568095-chr3:21579893..21581736,2	K562	blood:
2	chr3:21565741..21568055-chr3:21571417..21573750,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10510513	0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11129007	0.95[JPT][hapmap]
rs13076181	0.80[JPT][hapmap]
rs13317601	0.80[JPT][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs151276	0.95[JPT][hapmap]
rs162411	0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs162412	0.85[JPT][hapmap]
rs162413	0.80[ASN][1000 genomes]
rs162414	0.95[JPT][hapmap]
rs163482	1.00[JPT][hapmap]
rs192058	0.95[JPT][hapmap]
rs2059400	0.82[CEU][hapmap];0.91[JPT][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs233142	0.95[JPT][hapmap]
rs233143	0.94[JPT][hapmap]
rs233146	0.95[JPT][hapmap]
rs233147	0.95[JPT][hapmap]
rs233150	0.95[JPT][hapmap]
rs233153	0.95[JPT][hapmap]
rs233156	1.00[JPT][hapmap]
rs233157	1.00[JPT][hapmap]
rs3843876	0.80[CEU][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3860577	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3860578	0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4858328	0.83[CEU][hapmap];0.84[JPT][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4858329	0.86[JPT][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6789053	0.81[CEU][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7615120	0.84[CEU][hapmap];0.90[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7640256	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7642500	0.86[JPT][hapmap];0.85[EUR][1000 genomes]
rs7646837	0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9310648	0.80[JPT][hapmap]
rs9310649	0.80[CEU][hapmap];0.90[JPT][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9810352	0.84[CEU][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9829496	0.86[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9847127	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9851531	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9862072	0.80[JPT][hapmap]
rs9862207	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006471	chr3:21385627-21596955	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21553200-21574400	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:21561800-21587800	Weak transcription	Aorta	Aorta
3	chr3:21565400-21566600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:21566400-21572200	Weak transcription	K562	blood
5	chr3:21566400-21575800	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links