Variant report

Variant	rs9851531
Chromosome Location	chr3:21584280-21584281
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:21)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:21 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr3:21584203-21584403	K562	blood:	n/a	n/a
2	MAX	chr3:21583988-21584334	K562	blood:	n/a	n/a
3	POLR2A	chr3:21584015-21584506	NB4	blood:	n/a	n/a
4	TBP	chr3:21584106-21584628	K562	blood:	n/a	n/a
5	POLR2A	chr3:21584063-21584497	K562	blood:	n/a	n/a
6	PML	chr3:21584142-21584510	K562	blood:	n/a	n/a
7	POLR2A	chr3:21584002-21584668	K562	blood:	n/a	n/a
8	MYC	chr3:21583990-21584452	NB4	blood:	n/a	n/a
9	MAX	chr3:21584164-21584425	K562	blood:	n/a	n/a
10	GABPA	chr3:21583920-21584458	K562	blood:	n/a	n/a
11	MAX	chr3:21584123-21585963	NB4	blood:	n/a	n/a
12	POLR2A	chr3:21584103-21584332	K562	blood:	n/a	n/a
13	MYC	chr3:21584205-21584449	K562	blood:	n/a	n/a
14	GABPA	chr3:21584107-21584379	K562	blood:	n/a	n/a
15	NR2F2	chr3:21584156-21584431	K562	blood:	n/a	n/a
16	POLR2A	chr3:21583996-21584957	K562	blood:	n/a	n/a
17	CBX3	chr3:21583994-21584381	K562	blood:	n/a	n/a
18	RCOR1	chr3:21584013-21584518	K562	blood:	n/a	n/a
19	HEY1	chr3:21584066-21584404	K562	blood:	n/a	n/a
20	MYC	chr3:21584219-21584429	K562	blood:	n/a	n/a
21	ELF1	chr3:21584027-21584325	K562	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:21584249-21584299	Caco-2	colon:	n/a
2	chr3:21584249-21584299	T-47D	breast:	n/a
3	chr3:21584249-21584299	HRPEpiC	eye:	n/a
4	chr3:21584249-21584299	HUVEC	blood vessel:	n/a
5	chr3:21584249-21584299	BE2_C	brain:	n/a
6	chr3:21584249-21584299	HCM	heart:	n/a
7	chr3:21584249-21584299	NHDF-neo	bronchial:	n/a
8	chr3:21584249-21584299	HCPEpiC	choroid plexus:	n/a
9	chr3:21584249-21584299	IMR90	lung:	fetal
10	chr3:21584249-21584299	HPAEpiC	pulmonary alveolar:	n/a
11	chr3:21584249-21584299	AoSMC	blood vessel:	n/a
12	chr3:21584249-21584299	AG10803	skin:	n/a
13	chr3:21584249-21584299	SAEC	small airway:	n/a
14	chr3:21584249-21584299	LNCaP	prostate:	n/a
15	chr3:21584249-21584299	HNPCEpiC	eye:	n/a
16	chr3:21584249-21584299	SKMC	muscle:	n/a
17	chr3:21584249-21584299	HCF	heart:	n/a
18	chr3:21584249-21584299	SK-N-SH	brain:	n/a
19	chr3:21584249-21584299	PANC-1	pancreas:	n/a
20	chr3:21584249-21584299	GM12878	blood:	n/a
21	chr3:21584249-21584299	HRCEpiC	kidney:	n/a
22	chr3:21584249-21584299	HMEC	breast:	n/a
23	chr3:21584249-21584299	GM12891	blood:	n/a
24	chr3:21584249-21584299	HRE	kidney:	n/a
25	chr3:21584249-21584299	AG04449	skin:	fetal
26	chr3:21584249-21584299	ovcar-3	ovarian:	n/a
27	chr3:21584249-21584299	SK-N-MC	brain:	n/a
28	chr3:21584249-21584299	HepG2	liver:	n/a
29	chr3:21584249-21584299	BJ	skin:	n/a
30	chr3:21584249-21584299	HAEpiC	amniotic membrane:	n/a
31	chr3:21584249-21584299	ProgFib	skin:	n/a
32	chr3:21584249-21584299	H1-hESC	embryonic stem cell:	embryo
33	chr3:21584249-21584299	RPTEC	kidney:	n/a
34	chr3:21584249-21584299	MCF-7	breast:	n/a
35	chr3:21584249-21584299	GM19239	blood:	n/a
36	chr3:21584249-21584299	PrEC	prostate:	n/a
37	chr3:21584249-21584299	NT2-D1	testis:	n/a
38	chr3:21584249-21584299	HIPEpiC	eye:	n/a
39	chr3:21584249-21584299	U87	brain:	n/a
40	chr3:21584249-21584299	AG04450	lung:	fetal
41	chr3:21584249-21584299	MCF10A-Er-Src	breast:	n/a
42	chr3:21584249-21584299	Jurkat	blood:	n/a
43	chr3:21584249-21584299	NHBE	bronchial:	n/a
44	chr3:21584249-21584299	PFSK-1	brain:	n/a
45	chr3:21584249-21584299	A549	lung:	n/a
46	chr3:21584249-21584299	GM12892	blood:	n/a
47	chr3:21584249-21584299	Hepatocyte	liver:	n/a
48	chr3:21584249-21584299	ECC-1	luminal epithelium:	n/a
49	chr3:21584249-21584299	K562	blood:	n/a
50	chr3:21584249-21584299	HCT-116	colon:	n/a

No data

Variant related genes	Relation type
ZNF385D-AS1	TF binding region
ZNF385D-AS1	CpG island

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11129007	0.85[ASN][1000 genomes]
rs149267	0.87[ASN][1000 genomes]
rs151276	0.87[ASN][1000 genomes]
rs162414	0.87[ASN][1000 genomes]
rs192058	0.86[ASN][1000 genomes]
rs2059400	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs233142	0.86[ASN][1000 genomes]
rs233143	0.85[ASN][1000 genomes]
rs233146	0.85[ASN][1000 genomes]
rs233147	0.85[ASN][1000 genomes]
rs233149	0.85[ASN][1000 genomes]
rs233150	0.85[ASN][1000 genomes]
rs233151	0.84[ASN][1000 genomes]
rs233153	0.85[ASN][1000 genomes]
rs3843876	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3860578	0.81[AMR][1000 genomes]
rs4858328	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4858329	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6789053	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7615120	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7637649	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7640256	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7646837	0.80[EUR][1000 genomes]
rs9310649	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9810352	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9847127	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006471	chr3:21385627-21596955	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21561800-21587800	Weak transcription	Aorta	Aorta
2	chr3:21566600-21585400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:21574000-21602000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:21582000-21584800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:21582400-21585600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:21584000-21586400	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr3:21584200-21584600	Active TSS	H1 Cell Line	embryonic stem cell
8	chr3:21584200-21585400	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr3:21584200-21586000	Active TSS	H9 Cell Line	embryonic stem cell
10	chr3:21584200-21587800	Active TSS	K562	blood

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