Variant report

Variant	rs4858328
Chromosome Location	chr3:21572733-21572734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:20378280..20380658-chr3:21571258..21574044,2	K562	blood:
2	chr3:21565741..21568055-chr3:21571417..21573750,2	K562	blood:
3	chr3:21572284..21575106-chr3:21582629..21584216,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10510513	0.91[CEU][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11129007	0.89[JPT][hapmap]
rs13317601	0.86[CEU][hapmap];0.83[JPT][hapmap];0.85[EUR][1000 genomes]
rs151276	0.89[JPT][hapmap]
rs162411	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs162412	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs162413	0.86[ASN][1000 genomes]
rs162414	0.89[JPT][hapmap]
rs162415	0.84[JPT][hapmap]
rs163482	0.83[JPT][hapmap]
rs192058	0.89[JPT][hapmap]
rs2059400	0.92[CEU][hapmap];0.95[JPT][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs233142	0.89[JPT][hapmap]
rs233143	0.94[JPT][hapmap]
rs233146	0.89[JPT][hapmap]
rs233147	0.89[JPT][hapmap]
rs233150	0.89[JPT][hapmap]
rs233153	0.89[JPT][hapmap]
rs233156	0.84[JPT][hapmap]
rs233157	0.83[JPT][hapmap]
rs3843876	0.91[CEU][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3860577	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3860578	0.83[CEU][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4858329	0.87[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6789053	0.87[CEU][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7615120	0.95[CEU][hapmap];0.94[JPT][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7637649	0.83[CEU][hapmap];0.84[JPT][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7640256	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7642500	0.83[CEU][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes]
rs7646837	0.86[CEU][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9310648	0.83[JPT][hapmap]
rs9310649	0.95[CEU][hapmap];0.94[JPT][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9310650	0.88[YRI][hapmap]
rs9810352	0.91[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9829496	0.86[CEU][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes]
rs9847127	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9851531	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9862072	0.83[JPT][hapmap]
rs9862207	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006471	chr3:21385627-21596955	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21553200-21574400	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:21561800-21587800	Weak transcription	Aorta	Aorta
3	chr3:21566400-21575800	Weak transcription	Fetal Stomach	stomach
4	chr3:21566600-21585400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:21569000-21572800	Weak transcription	Left Ventricle	heart
6	chr3:21570400-21575600	Weak transcription	Fetal Brain Male	brain
7	chr3:21572000-21574200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr3:21572000-21574400	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr3:21572200-21572800	Enhancers	K562	blood

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