Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr3:21583988-21584334	K562	blood:	n/a	n/a
2	CTCF	chr3:21583880-21584030	NHLF	lung:	n/a	n/a
3	MYC	chr3:21583990-21584452	NB4	blood:	n/a	n/a
4	GABPA	chr3:21583920-21584458	K562	blood:	n/a	n/a
5	POLR2A	chr3:21583996-21584957	K562	blood:	n/a	n/a
6	CBX3	chr3:21583994-21584381	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:21558303..21559979-chr3:21581048..21584024,2	K562	blood:
2	chr3:21572284..21575106-chr3:21582629..21584216,2	K562	blood:

Variant related genes	Relation type
ZNF385D-AS1	TF binding region

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11129007	0.85[ASN][1000 genomes]
rs149267	0.87[ASN][1000 genomes]
rs151276	0.87[ASN][1000 genomes]
rs162414	0.87[ASN][1000 genomes]
rs192058	0.86[ASN][1000 genomes]
rs2059400	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs233142	0.86[ASN][1000 genomes]
rs233143	0.85[ASN][1000 genomes]
rs233146	0.85[ASN][1000 genomes]
rs233147	0.85[ASN][1000 genomes]
rs233149	0.85[ASN][1000 genomes]
rs233150	0.85[ASN][1000 genomes]
rs233151	0.84[ASN][1000 genomes]
rs233153	0.85[ASN][1000 genomes]
rs3843876	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4858328	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4858329	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6789053	0.86[EUR][1000 genomes]
rs7615120	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7637649	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7640256	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7646837	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9310649	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9810352	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9851531	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006471	chr3:21385627-21596955	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21561800-21587800	Weak transcription	Aorta	Aorta
2	chr3:21566600-21585400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:21574000-21602000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:21574800-21584000	Weak transcription	K562	blood
5	chr3:21580800-21584200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:21582000-21584800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:21582400-21585600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr3:21584000-21584200	Flanking Active TSS	K562	blood
9	chr3:21584000-21586400	Active TSS	HUES6 Cell Line	embryonic stem cell

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