Variant report

Variant	rs1652518
Chromosome Location	chr15:58605881-58605882
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:58605115..58606727-chr15:59224287..59226768,2	K562	blood:
2	chr15:58605658..58608567-chr15:58611252..58614242,4	K562	blood:
3	chr15:58605283..58607712-chr15:58611252..58614871,4	K562	blood:
4	chr15:58595612..58601278-chr15:58601529..58605992,7	K562	blood:

Variant related genes	Relation type
ENSG00000137776	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12594224	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs12594686	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1652520	0.90[ASN][1000 genomes]
rs1663238	0.92[ASN][1000 genomes]
rs56996176	0.87[EUR][1000 genomes]
rs8032466	1.00[CEU][hapmap]
rs8032700	1.00[CEU][hapmap]
rs8033458	1.00[CEU][hapmap]
rs8039902	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv833024	chr15:58447459-58621963	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv529717	chr15:58519923-58756814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv904266	chr15:58580921-58689187	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58599800-58606600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr15:58602600-58606200	Weak transcription	Thymus	Thymus
3	chr15:58603000-58606000	Weak transcription	Lung	lung
4	chr15:58603000-58606800	Weak transcription	Adipose Nuclei	Adipose
5	chr15:58603200-58606000	Weak transcription	Esophagus	oesophagus
6	chr15:58603200-58606000	Weak transcription	Right Atrium	heart
7	chr15:58604400-58608600	Enhancers	Primary T cells from cord blood	blood
8	chr15:58604800-58607600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr15:58604800-58608200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr15:58605000-58606200	Enhancers	Spleen	Spleen
11	chr15:58605000-58606800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr15:58605000-58607600	Enhancers	Primary T cells fromperipheralblood	blood
13	chr15:58605000-58608000	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr15:58605200-58606200	Enhancers	K562	blood
15	chr15:58605200-58607600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr15:58605400-58606000	Weak transcription	Placenta	Placenta
17	chr15:58605400-58607600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr15:58605400-58608000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr15:58605400-58608000	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr15:58605600-58606200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr15:58605600-58607600	Enhancers	Fetal Thymus	thymus
22	chr15:58605600-58607800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr15:58605600-58608000	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr15:58605600-58608200	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr15:58605800-58606200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
26	chr15:58605800-58606400	Weak transcription	GM12878-XiMat	blood
27	chr15:58605800-58607200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

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