Variant report

Variant	rs56996176
Chromosome Location	chr15:58626790-58626791
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:58626618-58626802	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58624616..58627086-chr15:58627284..58629454,3	MCF-7	breast:
2	chr15:58615644..58618290-chr15:58625044..58627431,2	K562	blood:
3	chr15:58621217..58623761-chr15:58624859..58627813,2	MCF-7	breast:
4	chr15:58626290..58628080-chr15:58631126..58633534,2	MCF-7	breast:
5	chr15:58625329..58627247-chr15:58636913..58638829,3	MCF-7	breast:
6	chr15:58625565..58627627-chr15:59040149..59042801,2	MCF-7	breast:
7	chr15:58518907..58522119-chr15:58624457..58627687,4	K562	blood:

No data

No data

No data

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12594686	0.81[ASN][1000 genomes]
rs1652518	0.87[EUR][1000 genomes]
rs1652520	1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1663238	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv529717	chr15:58519923-58756814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv904266	chr15:58580921-58689187	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58622000-58627200	Enhancers	Placenta	Placenta
2	chr15:58624600-58627800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr15:58625000-58643200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:58625200-58627000	Weak transcription	Spleen	Spleen
5	chr15:58625400-58628000	Weak transcription	Fetal Kidney	kidney
6	chr15:58625400-58628800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr15:58625800-58627000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:58625800-58627000	Weak transcription	Esophagus	oesophagus
9	chr15:58625800-58629200	Weak transcription	Psoas Muscle	Psoas
10	chr15:58626000-58627000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr15:58626000-58627000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr15:58626000-58627000	Weak transcription	Pancreas	Pancrea
13	chr15:58626000-58634800	Weak transcription	NHLF	lung
14	chr15:58626000-58638200	Weak transcription	HSMMtube	muscle
15	chr15:58626200-58627200	Enhancers	A549	lung
16	chr15:58626200-58638400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr15:58626600-58628400	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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