Variant report

Variant	rs1667362
Chromosome Location	chr19:37487349-37487350
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1069756	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1069757	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1148397	1.00[YRI][hapmap]
rs1644644	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1644646	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1644653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1644655	1.00[AFR][1000 genomes]
rs1644680	1.00[AFR][1000 genomes]
rs1644694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1644703	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1644709	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1667332	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1667334	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1667361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2254217	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2435066	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2562584	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2562586	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2562588	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2562590	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35624635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs477893	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs485980	0.85[AFR][1000 genomes]
rs486891	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs525345	0.85[YRI][hapmap]
rs549031	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs565030	1.00[YRI][hapmap]
rs569068	0.82[AFR][1000 genomes]
rs573596	0.88[AFR][1000 genomes]
rs577844	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs703528	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs703529	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs703532	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs703533	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs703534	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs703536	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7250855	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7251397	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7251690	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7255103	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7255177	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7255728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7257279	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7258653	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs7259422	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7259881	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8102364	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8112080	1.00[YRI][hapmap]
rs826286	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs826287	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs862248	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
12	nsv523848	chr19:37357289-37487632	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
13	nsv833818	chr19:37427808-37602800	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
14	nsv579463	chr19:37437106-37488055	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
15	nsv911652	chr19:37437106-37774299	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
16	nsv911653	chr19:37482151-37556673	ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37468800-37487800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr19:37472200-37487400	Weak transcription	Brain Angular Gyrus	brain
3	chr19:37476800-37489400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr19:37479200-37489000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr19:37479800-37489000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
6	chr19:37480400-37488800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
7	chr19:37480400-37489000	ZNF genes & repeats	Primary T cells from cord blood	blood
8	chr19:37480400-37489000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
9	chr19:37480400-37489000	ZNF genes & repeats	Liver	Liver
10	chr19:37481400-37489000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
11	chr19:37481600-37488600	ZNF genes & repeats	Adipose Nuclei	Adipose
12	chr19:37481800-37488800	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
13	chr19:37481800-37489400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
14	chr19:37482600-37488800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr19:37482600-37489000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr19:37482800-37487400	Weak transcription	HSMM	muscle
17	chr19:37483200-37487800	Weak transcription	Gastric	stomach
18	chr19:37483800-37487400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr19:37483800-37487600	Weak transcription	Right Ventricle	heart
20	chr19:37484000-37487400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr19:37484000-37488000	Strong transcription	Skeletal Muscle Female	skeletal muscle
22	chr19:37484200-37487400	Weak transcription	Fetal Kidney	kidney
23	chr19:37484400-37487400	Weak transcription	Brain Substantia Nigra	brain
24	chr19:37484400-37487600	Weak transcription	HSMMtube	muscle
25	chr19:37484400-37490600	Weak transcription	Stomach Mucosa	stomach
26	chr19:37484600-37487400	Weak transcription	Fetal Heart	heart
27	chr19:37484600-37487800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr19:37484800-37487600	Weak transcription	Psoas Muscle	Psoas
29	chr19:37485400-37487800	Strong transcription	Fetal Lung	lung
30	chr19:37485400-37488600	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
31	chr19:37485400-37489000	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
32	chr19:37485600-37487600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
33	chr19:37485600-37488600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
34	chr19:37485600-37488600	ZNF genes & repeats	Aorta	Aorta
35	chr19:37485600-37488600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
36	chr19:37485600-37488600	Strong transcription	Left Ventricle	heart
37	chr19:37485600-37489400	ZNF genes & repeats	Ovary	ovary
38	chr19:37485800-37488600	Strong transcription	Brain Cingulate Gyrus	brain
39	chr19:37485800-37488600	ZNF genes & repeats	Thymus	Thymus
40	chr19:37485800-37489200	Strong transcription	Fetal Muscle Leg	muscle
41	chr19:37486000-37487400	Strong transcription	Stomach Smooth Muscle	stomach
42	chr19:37486000-37487800	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
43	chr19:37486000-37488600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
44	chr19:37486000-37488600	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
45	chr19:37486000-37488800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
46	chr19:37486000-37488800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
47	chr19:37486200-37488000	Strong transcription	Dnd41	blood
48	chr19:37486200-37488600	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
49	chr19:37486200-37488800	ZNF genes & repeats	Primary B cells from cord blood	blood
50	chr19:37486200-37488800	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood

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