Variant report

Variant	rs7255103
Chromosome Location	chr19:37591341-37591342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1069756	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1069757	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1644644	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1644646	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1644653	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1644655	0.91[AFR][1000 genomes]
rs1644680	0.91[AFR][1000 genomes]
rs1644694	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1644703	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1644709	1.00[AMR][1000 genomes]
rs1667332	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1667334	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1667361	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1667362	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2254217	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2435066	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2562584	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2562586	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2562588	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2562590	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35624635	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs477893	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs486891	1.00[AMR][1000 genomes]
rs549031	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs577844	1.00[AMR][1000 genomes]
rs703528	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs703529	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs703532	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs703533	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs703534	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs703536	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7250855	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7251397	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7251690	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7255177	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7255728	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7257279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7258653	1.00[AMR][1000 genomes]
rs7259422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7259881	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8102364	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs826286	1.00[AMR][1000 genomes]
rs826287	1.00[AMR][1000 genomes]
rs862248	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
12	nsv833818	chr19:37427808-37602800	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
13	nsv911652	chr19:37437106-37774299	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
14	nsv911654	chr19:37487632-37758082	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37571000-37594800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr19:37572400-37594600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
3	chr19:37572600-37595400	ZNF genes & repeats	Adipose Nuclei	Adipose
4	chr19:37572800-37594600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
5	chr19:37572800-37594800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
6	chr19:37572800-37595400	ZNF genes & repeats	Liver	Liver
7	chr19:37575400-37592400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr19:37575400-37595200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr19:37575800-37594800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
10	chr19:37576200-37595600	ZNF genes & repeats	Ovary	ovary
11	chr19:37576200-37595800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
12	chr19:37577400-37592400	Strong transcription	Skeletal Muscle Male	skeletal muscle
13	chr19:37578800-37594600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
14	chr19:37578800-37594800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr19:37579000-37594800	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
16	chr19:37579200-37593800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
17	chr19:37579400-37594800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
18	chr19:37579600-37595400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr19:37579800-37594800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
20	chr19:37579800-37595000	ZNF genes & repeats	Fetal Brain Female	brain
21	chr19:37581800-37591400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
22	chr19:37583200-37593000	Weak transcription	Osteobl	bone
23	chr19:37584400-37591400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
24	chr19:37584600-37595000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr19:37585000-37592400	Weak transcription	Stomach Mucosa	stomach
26	chr19:37586000-37594800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
27	chr19:37586200-37592000	ZNF genes & repeats	Primary T cells from cord blood	blood
28	chr19:37586200-37594800	ZNF genes & repeats	Colon Smooth Muscle	Colon
29	chr19:37586200-37595000	ZNF genes & repeats	Dnd41	blood
30	chr19:37586600-37594800	ZNF genes & repeats	Brain Anterior Caudate	brain
31	chr19:37587000-37591400	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
32	chr19:37587000-37592400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr19:37587200-37591400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
34	chr19:37587400-37591400	ZNF genes & repeats	Fetal Lung	lung
35	chr19:37587800-37591600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr19:37587800-37592400	Weak transcription	HSMMtube	muscle
37	chr19:37588400-37592800	Weak transcription	Placenta	Placenta
38	chr19:37588400-37594800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
39	chr19:37588600-37594800	ZNF genes & repeats	Brain Germinal Matrix	brain
40	chr19:37588600-37594800	ZNF genes & repeats	Brain Substantia Nigra	brain
41	chr19:37588800-37591400	ZNF genes & repeats	Brain Angular Gyrus	brain
42	chr19:37588800-37591400	ZNF genes & repeats	Fetal Brain Male	brain
43	chr19:37588800-37591400	ZNF genes & repeats	Fetal Muscle Leg	muscle
44	chr19:37588800-37591600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr19:37588800-37592000	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
46	chr19:37588800-37592600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr19:37588800-37593600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
48	chr19:37588800-37594800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
49	chr19:37588800-37594800	ZNF genes & repeats	Brain Hippocampus Middle	brain
50	chr19:37588800-37594800	ZNF genes & repeats	Fetal Intestine Large	intestine

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