Variant report

Variant	rs7259881
Chromosome Location	chr19:37615496-37615497
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:37614645..37616647-chr19:37619610..37622245,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1069756	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1069757	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1644644	1.00[AMR][1000 genomes]
rs1644646	1.00[AMR][1000 genomes]
rs1644653	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1644655	0.82[AFR][1000 genomes]
rs1644680	0.82[AFR][1000 genomes]
rs1644694	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1644703	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1644709	1.00[AMR][1000 genomes]
rs1667332	1.00[AMR][1000 genomes]
rs1667334	1.00[AMR][1000 genomes]
rs1667361	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1667362	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2254217	1.00[AMR][1000 genomes]
rs2435066	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2562584	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2562586	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2562588	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2562590	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35624635	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs477893	1.00[AMR][1000 genomes]
rs486891	1.00[AMR][1000 genomes]
rs549031	1.00[AMR][1000 genomes]
rs577844	1.00[AMR][1000 genomes]
rs703528	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs703529	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs703532	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs703533	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs703534	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs703536	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7250855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7251397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7251690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7255103	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7255177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7255728	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7257279	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7258653	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7259422	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8102364	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs826286	1.00[AMR][1000 genomes]
rs826287	1.00[AMR][1000 genomes]
rs862248	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
12	nsv911652	chr19:37437106-37774299	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
13	nsv911654	chr19:37487632-37758082	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37599200-37618000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr19:37613400-37622400	ZNF genes & repeats	Brain Germinal Matrix	brain
3	chr19:37613400-37642200	ZNF genes & repeats	Adipose Nuclei	Adipose
4	chr19:37613400-37642200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr19:37613600-37617000	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
6	chr19:37613600-37622400	ZNF genes & repeats	Dnd41	blood
7	chr19:37613600-37623600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr19:37613600-37625800	ZNF genes & repeats	Brain Cingulate Gyrus	brain
9	chr19:37613600-37627600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr19:37613600-37628000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
11	chr19:37613600-37628400	ZNF genes & repeats	Brain Substantia Nigra	brain
12	chr19:37613600-37629400	ZNF genes & repeats	Brain Hippocampus Middle	brain
13	chr19:37613600-37629600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
14	chr19:37613800-37621800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
15	chr19:37613800-37629600	ZNF genes & repeats	Brain Anterior Caudate	brain
16	chr19:37613800-37662200	ZNF genes & repeats	Liver	Liver
17	chr19:37614600-37622400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr19:37614800-37622600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr19:37614800-37624800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr19:37614800-37626600	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
21	chr19:37614800-37628200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
22	chr19:37615000-37615800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
23	chr19:37615000-37616600	ZNF genes & repeats	Fetal Lung	lung
24	chr19:37615200-37621200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--

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