Variant report

Variant	rs7251397
Chromosome Location	chr19:37639464-37639465
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF585A-2	chr19:37638507-37641036	NONHSAT066071

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1069756	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1069757	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1644644	1.00[AMR][1000 genomes]
rs1644646	1.00[AMR][1000 genomes]
rs1644653	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1644655	0.82[AFR][1000 genomes]
rs1644680	0.82[AFR][1000 genomes]
rs1644694	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1644703	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1667332	1.00[AMR][1000 genomes]
rs1667334	1.00[AMR][1000 genomes]
rs1667361	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1667362	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2254217	1.00[AMR][1000 genomes]
rs2435066	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2562584	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2562586	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2562588	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2562590	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35624635	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs477893	1.00[AMR][1000 genomes]
rs549031	1.00[AMR][1000 genomes]
rs703528	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs703529	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs703532	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs703533	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs703534	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs703536	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7250855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7251690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7255103	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7255177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7255728	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7257279	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7258653	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7259422	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7259881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8102364	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs862248	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
12	nsv911652	chr19:37437106-37774299	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
13	nsv911654	chr19:37487632-37758082	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
14	nsv2477	chr19:37617348-37662207	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37613400-37642200	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr19:37613400-37642200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
3	chr19:37613800-37662200	ZNF genes & repeats	Liver	Liver
4	chr19:37634400-37657800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr19:37634800-37642600	ZNF genes & repeats	Brain Germinal Matrix	brain
6	chr19:37635000-37641800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
7	chr19:37635000-37642000	ZNF genes & repeats	Fetal Brain Male	brain
8	chr19:37635000-37642200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr19:37635000-37656200	ZNF genes & repeats	Fetal Brain Female	brain
10	chr19:37635200-37642200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
11	chr19:37635200-37642200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
12	chr19:37635200-37642200	ZNF genes & repeats	Fetal Lung	lung
13	chr19:37635200-37642200	ZNF genes & repeats	Ovary	ovary
14	chr19:37635200-37661400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
15	chr19:37635200-37661600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr19:37635400-37642000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
17	chr19:37635400-37642200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr19:37635600-37642200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr19:37635600-37642200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
20	chr19:37635800-37642000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
21	chr19:37635800-37642200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
22	chr19:37635800-37642800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr19:37636200-37642000	ZNF genes & repeats	Psoas Muscle	Psoas
24	chr19:37637400-37642000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr19:37637400-37642000	ZNF genes & repeats	Brain Angular Gyrus	brain
26	chr19:37637400-37642200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
27	chr19:37637400-37642200	ZNF genes & repeats	Brain Hippocampus Middle	brain
28	chr19:37637400-37642200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
29	chr19:37637400-37642200	ZNF genes & repeats	Dnd41	blood
30	chr19:37637400-37656800	ZNF genes & repeats	Brain Anterior Caudate	brain
31	chr19:37637600-37640600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr19:37637600-37642200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
33	chr19:37637600-37642400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr19:37637800-37641800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr19:37637800-37642000	ZNF genes & repeats	Primary T cells from cord blood	blood
36	chr19:37638000-37639800	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr19:37638200-37640200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr19:37638200-37640400	Weak transcription	Gastric	stomach
39	chr19:37638200-37640400	Weak transcription	Thymus	Thymus
40	chr19:37638400-37640400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr19:37638400-37640400	Weak transcription	Placenta	Placenta
42	chr19:37638400-37640400	Weak transcription	Lung	lung
43	chr19:37638400-37640400	Weak transcription	Pancreas	Pancrea
44	chr19:37638800-37642200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr19:37639000-37641400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
46	chr19:37639000-37642000	ZNF genes & repeats	Left Ventricle	heart
47	chr19:37639000-37642200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
48	chr19:37639000-37642200	ZNF genes & repeats	Brain Substantia Nigra	brain
49	chr19:37639200-37640000	ZNF genes & repeats	Fetal Heart	heart
50	chr19:37639400-37639600	ZNF genes & repeats	Primary B cells from cord blood	blood

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