Variant report

Variant	rs1680215
Chromosome Location	chr15:60373695-60373696
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10450962	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1108436	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs1648243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16942101	0.93[EUR][1000 genomes]
rs16942152	1.00[GIH][hapmap]
rs16942154	1.00[GIH][hapmap]
rs16942155	1.00[GIH][hapmap]
rs16942157	1.00[GIH][hapmap]
rs16942159	1.00[GIH][hapmap]
rs173036	0.87[EUR][1000 genomes]
rs2623796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335798	0.87[EUR][1000 genomes]
rs335801	0.93[EUR][1000 genomes]
rs335810	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57773569	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7183951	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833028	chr15:60227565-60418112	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60371200-60376200	Enhancers	Liver	Liver
2	chr15:60371200-60385600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:60371600-60393400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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