Variant report

Variant	rs173036
Chromosome Location	chr15:60358227-60358228
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10450962	0.94[EUR][1000 genomes]
rs1108436	1.00[GIH][hapmap];0.90[TSI][hapmap]
rs1648243	0.87[EUR][1000 genomes]
rs1680215	0.87[EUR][1000 genomes]
rs16942101	0.94[EUR][1000 genomes]
rs16942152	1.00[GIH][hapmap]
rs16942154	1.00[GIH][hapmap]
rs16942155	1.00[GIH][hapmap]
rs16942157	1.00[GIH][hapmap]
rs16942159	1.00[GIH][hapmap]
rs2623796	0.87[EUR][1000 genomes]
rs335798	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs335801	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs335810	0.94[EUR][1000 genomes]
rs57773569	0.87[EUR][1000 genomes]
rs7183951	0.87[EUR][1000 genomes]
rs73427232	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833028	chr15:60227565-60418112	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60354600-60362600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:60355400-60362600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr15:60356600-60358600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr15:60357400-60360000	Enhancers	Primary hematopoietic stem cells	blood
5	chr15:60357600-60358800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr15:60357800-60358800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr15:60357800-60359600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr15:60357800-60370000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:60358000-60359000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr15:60358200-60358600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links