Variant report

Variant	rs73427232
Chromosome Location	chr15:60353464-60353465
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10450962	0.86[EUR][1000 genomes]
rs10519023	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10851670	0.85[EUR][1000 genomes]
rs1108436	0.93[EUR][1000 genomes]
rs1559773	0.93[EUR][1000 genomes]
rs1648246	0.93[EUR][1000 genomes]
rs1680231	0.93[EUR][1000 genomes]
rs16942049	0.93[EUR][1000 genomes]
rs16942061	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16942101	0.86[EUR][1000 genomes]
rs173036	0.81[EUR][1000 genomes]
rs2414658	0.86[EUR][1000 genomes]
rs2554006	0.93[EUR][1000 genomes]
rs2899653	0.93[EUR][1000 genomes]
rs2899654	0.93[EUR][1000 genomes]
rs335798	0.81[EUR][1000 genomes]
rs335801	0.86[EUR][1000 genomes]
rs335810	0.86[EUR][1000 genomes]
rs57020611	0.93[EUR][1000 genomes]
rs59280158	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61628415	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7171231	0.85[EUR][1000 genomes]
rs8023442	0.93[EUR][1000 genomes]
rs986694	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833028	chr15:60227565-60418112	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1044105	chr15:60318001-60354519	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60351800-60353600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:60353200-60354000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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