Variant report
| Variant | rs1648246 |
|---|---|
| Chromosome Location | chr15:60352924-60352925 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:60352349..60354730-chr15:60356630..60358412,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10450962 | 0.80[EUR][1000 genomes] |
| rs10519023 | 1.00[EUR][1000 genomes] |
| rs10851670 | 0.93[EUR][1000 genomes] |
| rs1108436 | 1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs1559773 | 1.00[EUR][1000 genomes] |
| rs1680231 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16942049 | 1.00[EUR][1000 genomes] |
| rs16942061 | 1.00[EUR][1000 genomes] |
| rs16942101 | 0.80[EUR][1000 genomes] |
| rs16942152 | 1.00[GIH][hapmap] |
| rs16942154 | 1.00[GIH][hapmap] |
| rs16942155 | 1.00[GIH][hapmap] |
| rs16942157 | 1.00[GIH][hapmap] |
| rs16942159 | 1.00[GIH][hapmap] |
| rs2414658 | 0.93[EUR][1000 genomes] |
| rs2554006 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2899653 | 1.00[EUR][1000 genomes] |
| rs2899654 | 1.00[EUR][1000 genomes] |
| rs335801 | 0.80[EUR][1000 genomes] |
| rs335810 | 0.80[EUR][1000 genomes] |
| rs57020611 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59280158 | 1.00[EUR][1000 genomes] |
| rs61628415 | 1.00[EUR][1000 genomes] |
| rs7171231 | 0.93[EUR][1000 genomes] |
| rs73427232 | 0.93[EUR][1000 genomes] |
| rs8023442 | 0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs986694 | 0.93[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv904280 | chr15:60042722-60524025 | Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv833028 | chr15:60227565-60418112 | Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv1044105 | chr15:60318001-60354519 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:60351800-60353600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr15:60352000-60353200 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
