Variant report

Variant	rs57020611
Chromosome Location	chr15:60314686-60314687
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10450962	0.80[EUR][1000 genomes]
rs10519023	1.00[EUR][1000 genomes]
rs10851670	0.93[EUR][1000 genomes]
rs1108436	1.00[EUR][1000 genomes]
rs1559773	1.00[EUR][1000 genomes]
rs1648246	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1680231	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16942049	1.00[EUR][1000 genomes]
rs16942061	1.00[EUR][1000 genomes]
rs16942101	0.80[EUR][1000 genomes]
rs2414658	0.93[EUR][1000 genomes]
rs2554006	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2899653	1.00[EUR][1000 genomes]
rs2899654	1.00[EUR][1000 genomes]
rs335801	0.80[EUR][1000 genomes]
rs335810	0.80[EUR][1000 genomes]
rs59280158	1.00[EUR][1000 genomes]
rs61628415	1.00[EUR][1000 genomes]
rs7171231	0.93[EUR][1000 genomes]
rs73427232	0.93[EUR][1000 genomes]
rs8023442	1.00[EUR][1000 genomes]
rs986694	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833028	chr15:60227565-60418112	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv569607	chr15:60303749-60347452	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60312600-60314800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr15:60312800-60315200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr15:60312800-60315200	Enhancers	NHEK	skin
4	chr15:60313000-60314800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:60313000-60314800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr15:60313000-60314800	Enhancers	HMEC	breast
7	chr15:60313000-60315800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr15:60313200-60314800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr15:60313200-60315200	Enhancers	H9 Cell Line	embryonic stem cell
10	chr15:60313200-60315200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr15:60313200-60315800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr15:60313600-60314800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr15:60313600-60314800	Enhancers	Dnd41	blood
14	chr15:60313800-60314800	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr15:60313800-60315200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr15:60313800-60315200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr15:60313800-60315200	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr15:60314000-60315200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr15:60314000-60315600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:60314200-60314800	Enhancers	H1 Cell Line	embryonic stem cell
21	chr15:60314200-60314800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr15:60314200-60315200	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr15:60314200-60315200	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr15:60314600-60315200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr15:60314600-60317400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr15:60314600-60318000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr15:60314600-60318000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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