Variant report

Variant	rs335810
Chromosome Location	chr15:60368206-60368207
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10450962	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10519023	0.80[EUR][1000 genomes]
rs1108436	1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.80[EUR][1000 genomes]
rs1559773	0.80[EUR][1000 genomes]
rs1648243	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1648246	0.80[EUR][1000 genomes]
rs1680215	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1680231	0.80[EUR][1000 genomes]
rs16942049	0.80[EUR][1000 genomes]
rs16942061	0.80[EUR][1000 genomes]
rs16942101	1.00[EUR][1000 genomes]
rs16942152	1.00[GIH][hapmap]
rs16942154	1.00[GIH][hapmap]
rs16942155	1.00[GIH][hapmap]
rs16942157	1.00[GIH][hapmap]
rs16942159	1.00[GIH][hapmap]
rs173036	0.94[EUR][1000 genomes]
rs2554006	0.80[EUR][1000 genomes]
rs2623796	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2899653	0.80[EUR][1000 genomes]
rs2899654	0.80[EUR][1000 genomes]
rs335798	0.94[EUR][1000 genomes]
rs335801	1.00[EUR][1000 genomes]
rs57020611	0.80[EUR][1000 genomes]
rs57773569	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59280158	0.80[EUR][1000 genomes]
rs61628415	0.80[EUR][1000 genomes]
rs7183951	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73427232	0.86[EUR][1000 genomes]
rs8023442	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833028	chr15:60227565-60418112	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Type 2 diabetes	25102180	GWAS catalog

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60357800-60370000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:60358600-60369800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:60363000-60368400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:60363000-60368600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:60365000-60368400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr15:60365800-60370400	Enhancers	Primary T cells from cord blood	blood
7	chr15:60366200-60368800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr15:60366200-60369000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr15:60366200-60370600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr15:60366400-60369000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr15:60366400-60371800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr15:60366600-60371800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr15:60366800-60371600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr15:60367000-60369800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr15:60367000-60369800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr15:60367000-60371600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr15:60367200-60369800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr15:60367200-60370600	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr15:60367200-60371200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr15:60367200-60371200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr15:60367400-60369000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr15:60367400-60369200	Enhancers	H9 Cell Line	embryonic stem cell
23	chr15:60367400-60370200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr15:60367400-60370600	Enhancers	H1 Cell Line	embryonic stem cell
25	chr15:60367600-60368600	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr15:60367600-60370000	Weak transcription	Dnd41	blood
27	chr15:60368200-60370800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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