Variant report

Variant	rs7171231
Chromosome Location	chr15:60299959-60299960
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10519023	0.93[EUR][1000 genomes]
rs10851670	1.00[EUR][1000 genomes]
rs1108436	0.93[EUR][1000 genomes]
rs1559773	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1648246	0.93[EUR][1000 genomes]
rs1680231	0.93[EUR][1000 genomes]
rs16942049	0.93[EUR][1000 genomes]
rs16942061	0.93[EUR][1000 genomes]
rs2414658	0.86[EUR][1000 genomes]
rs2554006	0.93[EUR][1000 genomes]
rs2899653	0.93[EUR][1000 genomes]
rs2899654	0.93[EUR][1000 genomes]
rs2912116	0.85[EUR][1000 genomes]
rs4238346	0.85[EUR][1000 genomes]
rs4775226	0.85[EUR][1000 genomes]
rs57020611	0.93[EUR][1000 genomes]
rs59280158	0.93[EUR][1000 genomes]
rs61628415	0.93[EUR][1000 genomes]
rs6494154	0.85[EUR][1000 genomes]
rs7165183	0.85[EUR][1000 genomes]
rs73427232	0.85[EUR][1000 genomes]
rs8023442	0.93[EUR][1000 genomes]
rs986694	1.00[EUR][1000 genomes]
rs9919984	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833028	chr15:60227565-60418112	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1554	chr15:60273818-60313310	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60297600-60300600	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:60299000-60302400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:60299000-60314400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:60299200-60300600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:60299400-60301400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr15:60299400-60303200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:60299400-60305200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:60299600-60300200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr15:60299800-60300000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr15:60299800-60300200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr15:60299800-60300200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr15:60299800-60300200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
13	chr15:60299800-60301000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr15:60299800-60301000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
15	chr15:60299800-60301000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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