Variant report

Variant	rs4238346
Chromosome Location	chr15:60288426-60288427
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:60284211..60286465-chr15:60286927..60288861,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10851670	0.85[EUR][1000 genomes]
rs2912116	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4775226	1.00[EUR][1000 genomes]
rs6494154	1.00[EUR][1000 genomes]
rs7165183	1.00[EUR][1000 genomes]
rs7169031	0.85[YRI][hapmap]
rs7171231	0.85[EUR][1000 genomes]
rs986694	0.85[EUR][1000 genomes]
rs9919984	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833028	chr15:60227565-60418112	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1554	chr15:60273818-60313310	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60285200-60289600	Bivalent Enhancer	Brain Germinal Matrix	brain
2	chr15:60286000-60289200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
3	chr15:60286000-60289200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
4	chr15:60286000-60290000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
5	chr15:60286200-60289200	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
6	chr15:60286200-60289800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr15:60286200-60290000	Active TSS	H9 Cell Line	embryonic stem cell
8	chr15:60286400-60289000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:60286400-60289000	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
10	chr15:60286400-60289200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
11	chr15:60286600-60290000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
12	chr15:60286800-60289000	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
13	chr15:60286800-60290000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
14	chr15:60287000-60288600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr15:60287000-60289000	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
16	chr15:60287200-60290000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
17	chr15:60287600-60289200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr15:60287800-60288600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
19	chr15:60287800-60288600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
20	chr15:60287800-60288800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr15:60287800-60288800	Weak transcription	Pancreas	Pancrea
22	chr15:60288000-60288600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
23	chr15:60288000-60289800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
24	chr15:60288200-60288600	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr15:60288200-60288800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr15:60288200-60289800	Active TSS	HUES48 Cell Line	embryonic stem cell
27	chr15:60288400-60288600	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
28	chr15:60288400-60288600	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
29	chr15:60288400-60289200	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
30	chr15:60288400-60289600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
31	chr15:60288400-60290000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
32	chr15:60288400-60290400	Active TSS	H1 Cell Line	embryonic stem cell

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