Variant report

Variant	rs6494154
Chromosome Location	chr15:60268288-60268289
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10851670	0.85[EUR][1000 genomes]
rs2912116	1.00[EUR][1000 genomes]
rs4238346	1.00[EUR][1000 genomes]
rs4775226	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7165183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7171231	0.85[EUR][1000 genomes]
rs986694	0.85[EUR][1000 genomes]
rs9919984	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833028	chr15:60227565-60418112	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60265200-60269800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr15:60265200-60270200	Enhancers	Primary hematopoietic stem cells	blood
3	chr15:60266600-60268400	Enhancers	Primary T cells from cord blood	blood
4	chr15:60266600-60269000	Enhancers	Fetal Thymus	thymus
5	chr15:60266600-60270200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr15:60266600-60270400	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr15:60266600-60270800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr15:60266800-60268800	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr15:60266800-60269000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr15:60267000-60269800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr15:60267000-60270400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr15:60267200-60268600	Enhancers	Thymus	Thymus
13	chr15:60267200-60270800	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr15:60267200-60270800	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr15:60267600-60270000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr15:60267800-60269200	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr15:60267800-60269200	Flanking Active TSS	Dnd41	blood
18	chr15:60267800-60269800	Enhancers	Primary T cells fromperipheralblood	blood
19	chr15:60267800-60269800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr15:60267800-60270200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr15:60268000-60268600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
22	chr15:60268000-60270000	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr15:60268200-60268600	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr15:60268200-60268800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr15:60268200-60269000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
26	chr15:60268200-60269200	Enhancers	Primary B cells from cord blood	blood
27	chr15:60268200-60269200	Enhancers	Primary B cells from peripheral blood	blood

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