Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:60298753..60300794-chr15:60304335..60307250,2	K562	blood:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10519023	0.93[EUR][1000 genomes]
rs1108436	0.93[EUR][1000 genomes]
rs1559773	0.93[EUR][1000 genomes]
rs1648246	0.93[EUR][1000 genomes]
rs1680231	0.93[EUR][1000 genomes]
rs16942049	0.93[EUR][1000 genomes]
rs16942061	0.93[EUR][1000 genomes]
rs2414658	0.86[EUR][1000 genomes]
rs2554006	0.93[EUR][1000 genomes]
rs2899653	0.93[EUR][1000 genomes]
rs2899654	0.93[EUR][1000 genomes]
rs2912116	0.85[EUR][1000 genomes]
rs4238346	0.85[EUR][1000 genomes]
rs4775226	0.85[EUR][1000 genomes]
rs57020611	0.93[EUR][1000 genomes]
rs59280158	0.93[EUR][1000 genomes]
rs61628415	0.93[EUR][1000 genomes]
rs6494154	0.85[EUR][1000 genomes]
rs7165183	0.85[EUR][1000 genomes]
rs7171231	1.00[EUR][1000 genomes]
rs73427232	0.85[EUR][1000 genomes]
rs8023442	0.93[EUR][1000 genomes]
rs986694	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9919984	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833028	chr15:60227565-60418112	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1554	chr15:60273818-60313310	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv569607	chr15:60303749-60347452	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60299000-60314400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:60303200-60306400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr15:60303400-60306000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr15:60303600-60306000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr15:60304600-60306000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr15:60305400-60306200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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