Variant report

Variant	rs16822622
Chromosome Location	chr2:182981357-182981358
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10497592	1.00[MEX][hapmap]
rs12105839	1.00[MEX][hapmap];0.82[YRI][hapmap]
rs16822346	1.00[MEX][hapmap]
rs16822453	1.00[MEX][hapmap]
rs16822454	1.00[MEX][hapmap]
rs16822458	1.00[MEX][hapmap]
rs16822482	1.00[MEX][hapmap]
rs16822619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16822667	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs16822709	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs7588817	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv875478	chr2:182960289-182998122	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182966800-182996400	Weak transcription	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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