The 2.0 version of rSNPBase

Variant report

Variant rs16823311
Chromosome Location chr1:184536611-184536612
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:65 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:184512200-184543600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
2 chr1:184514400-184543800 Weak transcription H1 Cell Line embryonic stem cell
3 chr1:184520800-184542000 Weak transcription Ovary ovary
4 chr1:184521000-184547400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
5 chr1:184525000-184546000 Weak transcription Brain Angular Gyrus brain
6 chr1:184525600-184544000 Weak transcription Brain Cingulate Gyrus brain
7 chr1:184525600-184545600 Weak transcription Fetal Muscle Trunk muscle
8 chr1:184531000-184543800 Weak transcription Esophagus oesophagus
9 chr1:184531400-184543200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
10 chr1:184531800-184537000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
11 chr1:184531800-184537000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
12 chr1:184531800-184537000 Weak transcription Right Atrium heart
13 chr1:184531800-184540600 Weak transcription Right Ventricle heart
14 chr1:184531800-184543800 Weak transcription Fetal Muscle Leg muscle
15 chr1:184532200-184540600 Weak transcription Fetal Lung lung
16 chr1:184532400-184545800 Weak transcription Rectal Smooth Muscle rectum
17 chr1:184532600-184543600 Weak transcription Skeletal Muscle Male skeletal muscle
18 chr1:184532600-184545600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
19 chr1:184532800-184537800 Weak transcription Duodenum Smooth Muscle Duodenum
20 chr1:184533000-184537800 Weak transcription Fetal Adrenal Gland Adrenal Gland
21 chr1:184533000-184543800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
22 chr1:184533200-184547400 Weak transcription Colon Smooth Muscle Colon
23 chr1:184535200-184536800 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
24 chr1:184535200-184536800 Genic enhancers Breast Myoepithelial Primary Cells Breast
25 chr1:184535200-184536800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr1:184535200-184537800 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
27 chr1:184535200-184538400 Enhancers Primary hematopoietic stem cells short term culture blood
28 chr1:184535200-184538600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
29 chr1:184535400-184537200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
30 chr1:184535600-184538400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
31 chr1:184535800-184537200 Enhancers Primary Natural Killer cells fromperipheralblood blood
32 chr1:184535800-184537200 Enhancers Placenta Amnion Placenta Amnion
33 chr1:184535800-184537400 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
34 chr1:184535800-184537400 Enhancers Primary hematopoietic stem cells blood
35 chr1:184535800-184537400 Enhancers Placenta Placenta
36 chr1:184536000-184536800 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
37 chr1:184536000-184537000 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr1:184536000-184537000 Enhancers HMEC breast
39 chr1:184536000-184537200 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
40 chr1:184536000-184542200 Weak transcription Fetal Stomach stomach
41 chr1:184536000-184543400 Weak transcription Cortex derived primary cultured neurospheres brain
42 chr1:184536000-184545600 Weak transcription Left Ventricle heart
43 chr1:184536000-184559000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
44 chr1:184536000-184559000 Weak transcription NHEK skin
45 chr1:184536200-184536800 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
46 chr1:184536200-184537000 Weak transcription Rectal Mucosa Donor 29 rectum
47 chr1:184536200-184537200 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
48 chr1:184536200-184537200 Enhancers HSMMtube muscle
49 chr1:184536200-184539000 Enhancers Fetal Intestine Large intestine
50 chr1:184536200-184549200 Weak transcription NHDF-Ad bronchial

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Last update: Aug 31, 2015