The 2.0 version of rSNPBase

Variant report

Variant rs16824347
Chromosome Location chr1:185643937-185643938
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:185632800-185646200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr1:185635400-185648200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
3 chr1:185637200-185649200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
4 chr1:185639600-185648600 Weak transcription Left Ventricle heart
5 chr1:185639600-185649200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
6 chr1:185640000-185648600 Weak transcription HUES6 Cell Line embryonic stem cell
7 chr1:185641800-185644000 Enhancers Stomach Mucosa stomach
8 chr1:185641800-185644200 Enhancers Primary monocytes fromperipheralblood blood
9 chr1:185641800-185644400 Enhancers Primary hematopoietic stem cells short term culture blood
10 chr1:185642000-185645000 Enhancers Primary B cells from peripheral blood blood
11 chr1:185642000-185645200 Enhancers Rectal Mucosa Donor 31 rectum
12 chr1:185642200-185644000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
13 chr1:185642200-185644400 Enhancers Primary neutrophils fromperipheralblood blood
14 chr1:185642600-185648400 Weak transcription Right Atrium heart
15 chr1:185643000-185644000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
16 chr1:185643000-185644000 Enhancers Primary T helper 17 cells PMA-I stimulated --
17 chr1:185643000-185644000 Flanking Active TSS Monocytes-CD14+_RO01746 blood
18 chr1:185643000-185644200 Enhancers Primary T helper naive cells from peripheral blood blood
19 chr1:185643000-185644200 Enhancers Primary T killer memory cells from peripheral blood blood
20 chr1:185643000-185644400 Enhancers Primary T helper cells fromperipheralblood blood
21 chr1:185643000-185644600 Enhancers Primary T helper cells PMA-I stimulated --
22 chr1:185643200-185644000 Flanking Active TSS Primary B cells from cord blood blood
23 chr1:185643200-185644000 Enhancers Fetal Heart heart
24 chr1:185643200-185644000 Flanking Active TSS HepG2 liver
25 chr1:185643200-185644000 Flanking Active TSS HUVEC blood vessel
26 chr1:185643200-185644200 Flanking Active TSS Primary T cells from cord blood blood
27 chr1:185643200-185644200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
28 chr1:185643200-185644200 Enhancers Primary T killer naive cells fromperipheralblood blood
29 chr1:185643200-185648600 Weak transcription Fetal Thymus thymus
30 chr1:185643200-185649400 Weak transcription Fetal Adrenal Gland Adrenal Gland
31 chr1:185643400-185644000 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood
32 chr1:185643400-185644800 Enhancers Primary hematopoietic stem cells blood
33 chr1:185643600-185644000 Enhancers Fetal Intestine Small intestine
34 chr1:185643600-185644400 Enhancers Primary T regulatory cells fromperipheralblood blood
35 chr1:185643800-185644000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
36 chr1:185643800-185644000 Enhancers Adipose Nuclei Adipose
37 chr1:185643800-185644000 Enhancers Brain Hippocampus Middle brain
38 chr1:185643800-185644200 Enhancers Pancreatic Islets Pancreatic Islet
39 chr1:185643800-185645000 Enhancers Rectal Mucosa Donor 29 rectum
40 chr1:185643800-185646400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
41 chr1:185643800-185649200 Weak transcription ES-I3 Cell Line embryonic stem cell

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Last update: Aug 31, 2015