Variant report

Variant	rs73061121
Chromosome Location	chr1:185622528-185622529
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10489708	1.00[ASN][1000 genomes]
rs10489709	1.00[ASN][1000 genomes]
rs10489710	1.00[ASN][1000 genomes]
rs16824347	1.00[ASN][1000 genomes]
rs56690475	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57745490	1.00[ASN][1000 genomes]
rs61160546	1.00[ASN][1000 genomes]
rs6670922	1.00[ASN][1000 genomes]
rs6670930	1.00[ASN][1000 genomes]
rs6695637	1.00[ASN][1000 genomes]
rs73061125	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73061155	1.00[ASN][1000 genomes]
rs73061157	1.00[ASN][1000 genomes]
rs73061163	1.00[ASN][1000 genomes]
rs73062771	0.94[ASN][1000 genomes]
rs73062777	0.94[ASN][1000 genomes]
rs73068985	1.00[ASN][1000 genomes]
rs73070908	0.83[ASN][1000 genomes]
rs74133230	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185618800-185638800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:185620000-185623000	Weak transcription	Pancreas	Pancrea
3	chr1:185620000-185623200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:185620000-185624200	Weak transcription	Psoas Muscle	Psoas
5	chr1:185620000-185632200	Weak transcription	HepG2	liver
6	chr1:185620400-185623000	Weak transcription	Fetal Intestine Small	intestine
7	chr1:185622400-185622600	Flanking Active TSS	Fetal Heart	heart
8	chr1:185622400-185623800	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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