Variant report

Variant	rs57745490
Chromosome Location	chr1:185636705-185636706
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:185631655..185633229-chr1:185635269..185636792,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10489708	1.00[ASN][1000 genomes]
rs10489709	1.00[ASN][1000 genomes]
rs10489710	1.00[ASN][1000 genomes]
rs16824347	1.00[ASN][1000 genomes]
rs56690475	1.00[ASN][1000 genomes]
rs61160546	1.00[ASN][1000 genomes]
rs6670922	1.00[ASN][1000 genomes]
rs6670930	1.00[ASN][1000 genomes]
rs6695637	1.00[ASN][1000 genomes]
rs73061121	1.00[ASN][1000 genomes]
rs73061125	1.00[ASN][1000 genomes]
rs73061155	1.00[ASN][1000 genomes]
rs73061157	1.00[ASN][1000 genomes]
rs73061163	1.00[ASN][1000 genomes]
rs73062771	0.94[ASN][1000 genomes]
rs73062777	0.94[ASN][1000 genomes]
rs73068985	1.00[ASN][1000 genomes]
rs73070908	0.83[ASN][1000 genomes]
rs74133230	1.00[ASN][1000 genomes]
rs7529259	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185618800-185638800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:185632800-185639200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr1:185632800-185639400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr1:185632800-185641800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:185632800-185643400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:185632800-185646200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:185633200-185637200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr1:185633200-185639200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:185635200-185636800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr1:185635400-185639400	Weak transcription	Gastric	stomach
11	chr1:185635400-185648200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr1:185635800-185637200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr1:185636000-185637200	Weak transcription	Primary T cells from cord blood	blood
14	chr1:185636200-185639200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr1:185636200-185639200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr1:185636600-185636800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr1:185636600-185636800	Enhancers	HUVEC	blood vessel
18	chr1:185636600-185638200	Enhancers	Fetal Heart	heart
19	chr1:185636600-185639400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links