Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155390004..155392407-chr3:155396683..155399623,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1391974	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs16825215	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16825227	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16825322	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1835211	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41455745	1.00[ASW][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs56050389	1.00[AMR][1000 genomes]
rs57392477	1.00[AMR][1000 genomes]
rs57904166	1.00[AMR][1000 genomes]
rs57904879	1.00[AMR][1000 genomes]
rs58024502	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58881770	1.00[AMR][1000 genomes]
rs61610694	1.00[AMR][1000 genomes]
rs73873403	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873423	1.00[AMR][1000 genomes]
rs73873426	1.00[AMR][1000 genomes]
rs73873428	1.00[AMR][1000 genomes]
rs73873430	1.00[AMR][1000 genomes]
rs73873433	1.00[AMR][1000 genomes]
rs73874845	1.00[AMR][1000 genomes]
rs73876910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73876917	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73876924	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73876925	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7645367	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155383400-155393800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:155383400-155394000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:155383400-155395800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:155383600-155394000	Weak transcription	Pancreas	Pancrea
5	chr3:155385200-155394000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr3:155389600-155393000	Enhancers	HepG2	liver
7	chr3:155390000-155391800	Enhancers	Fetal Intestine Small	intestine
8	chr3:155390000-155392400	Enhancers	Fetal Intestine Large	intestine
9	chr3:155390400-155391800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:155390600-155393800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr3:155390800-155393200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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