Variant report

Variant	rs41455745
Chromosome Location	chr3:155419446-155419447
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:155074075..155074622-chr3:155419261..155420274,3	K562	blood:
2	chr3:155070467..155071395-chr3:155419423..155420352,4	K562	blood:
3	chr3:155099947..155101105-chr3:155419243..155420372,8	K562	blood:
4	chr3:155070527..155071479-chr3:155419274..155420293,4	MCF-7	breast:
5	chr3:155138776..155139298-chr3:155419434..155420178,2	MCF-7	breast:
6	chr3:155099375..155100930-chr3:155418818..155420546,12	MCF-7	breast:
7	chr3:155100129..155101039-chr3:155419368..155420316,12	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1391974	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16825215	1.00[AMR][1000 genomes]
rs16825227	1.00[ASW][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs16825238	1.00[ASW][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs16825322	1.00[AMR][1000 genomes]
rs1835211	1.00[AMR][1000 genomes]
rs56050389	1.00[AMR][1000 genomes]
rs57392477	1.00[AMR][1000 genomes]
rs57904166	1.00[AMR][1000 genomes]
rs57904879	1.00[AMR][1000 genomes]
rs58024502	1.00[AMR][1000 genomes]
rs58881770	1.00[AMR][1000 genomes]
rs61610694	1.00[AMR][1000 genomes]
rs73873403	1.00[AMR][1000 genomes]
rs73873423	1.00[AMR][1000 genomes]
rs73873426	1.00[AMR][1000 genomes]
rs73873428	1.00[AMR][1000 genomes]
rs73873430	1.00[AMR][1000 genomes]
rs73873433	1.00[AMR][1000 genomes]
rs73874845	1.00[AMR][1000 genomes]
rs73876910	1.00[AMR][1000 genomes]
rs73876917	1.00[AMR][1000 genomes]
rs73876924	1.00[AMR][1000 genomes]
rs73876925	1.00[AMR][1000 genomes]
rs7645367	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv829763	chr3:155417552-155470079	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155399800-155422000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:155400600-155421000	Weak transcription	Fetal Intestine Small	intestine
3	chr3:155409200-155422200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:155411000-155420600	Weak transcription	Fetal Intestine Large	intestine
5	chr3:155412600-155422400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:155412600-155437400	Weak transcription	Pancreas	Pancrea
7	chr3:155413800-155432000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr3:155414000-155420600	Weak transcription	Brain Germinal Matrix	brain
9	chr3:155415000-155421200	Weak transcription	Stomach Mucosa	stomach
10	chr3:155415600-155421400	Weak transcription	Brain Hippocampus Middle	brain
11	chr3:155417400-155421600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:155418000-155421600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:155418400-155420200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr3:155418600-155420200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr3:155418600-155420200	Enhancers	A549	lung
16	chr3:155418600-155421200	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:155418800-155419600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr3:155418800-155423400	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr3:155418800-155423400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr3:155419000-155419600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr3:155419000-155419800	Enhancers	Pancreatic Islets	Pancreatic Islet
22	chr3:155419000-155420200	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr3:155419200-155419600	Enhancers	Rectal Smooth Muscle	rectum
24	chr3:155419200-155419800	Enhancers	Brain Angular Gyrus	brain
25	chr3:155419200-155420400	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr3:155419200-155423600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr3:155419400-155419600	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr3:155419400-155419800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr3:155419400-155419800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr3:155419400-155419800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr3:155419400-155419800	Enhancers	Dnd41	blood
32	chr3:155419400-155420200	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr3:155419400-155420200	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr3:155419400-155420200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr3:155419400-155421400	Weak transcription	Brain Anterior Caudate	brain

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