Variant report

Variant	rs73873423
Chromosome Location	chr3:155526129-155526130
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1391974	1.00[AMR][1000 genomes]
rs16825215	1.00[AMR][1000 genomes]
rs16825227	1.00[AMR][1000 genomes]
rs16825238	1.00[AMR][1000 genomes]
rs16825322	1.00[AMR][1000 genomes]
rs1835211	1.00[AMR][1000 genomes]
rs41455745	1.00[AMR][1000 genomes]
rs56050389	1.00[AMR][1000 genomes]
rs57392477	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57904879	1.00[AMR][1000 genomes]
rs58024502	1.00[AMR][1000 genomes]
rs58881770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61610694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873403	1.00[AMR][1000 genomes]
rs73873426	1.00[AMR][1000 genomes]
rs73873428	1.00[AMR][1000 genomes]
rs73873430	1.00[AMR][1000 genomes]
rs73873433	1.00[AMR][1000 genomes]
rs73876910	1.00[AMR][1000 genomes]
rs73876917	1.00[AMR][1000 genomes]
rs73876924	1.00[AMR][1000 genomes]
rs73876925	1.00[AMR][1000 genomes]
rs7645367	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv999641	chr3:155481097-155534616	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155524400-155527000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:155524400-155527000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:155524400-155527200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:155524400-155527400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:155524400-155542800	Weak transcription	Left Ventricle	heart
6	chr3:155524400-155543600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:155524400-155547000	Weak transcription	HSMMtube	muscle
8	chr3:155524400-155565800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:155524400-155567400	Weak transcription	Lung	lung
10	chr3:155524400-155569400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr3:155524600-155527200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr3:155524600-155527400	Weak transcription	Osteobl	bone
13	chr3:155524600-155532800	Weak transcription	K562	blood
14	chr3:155524600-155544200	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr3:155524600-155563400	Weak transcription	Brain Angular Gyrus	brain
16	chr3:155524600-155568000	Weak transcription	HUVEC	blood vessel
17	chr3:155525600-155526200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:155526000-155543000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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