Variant report

Variant	rs73873403
Chromosome Location	chr3:155430001-155430002
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1391974	1.00[AMR][1000 genomes]
rs16825215	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16825227	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16825238	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16825322	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1835211	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41455745	1.00[AMR][1000 genomes]
rs56050389	1.00[AMR][1000 genomes]
rs57392477	1.00[AMR][1000 genomes]
rs57904166	1.00[AMR][1000 genomes]
rs57904879	1.00[AMR][1000 genomes]
rs58024502	1.00[AMR][1000 genomes]
rs58881770	1.00[AMR][1000 genomes]
rs61610694	1.00[AMR][1000 genomes]
rs73873423	1.00[AMR][1000 genomes]
rs73873426	1.00[AMR][1000 genomes]
rs73873428	1.00[AMR][1000 genomes]
rs73873430	1.00[AMR][1000 genomes]
rs73873433	1.00[AMR][1000 genomes]
rs73874845	1.00[AMR][1000 genomes]
rs73876910	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73876917	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73876924	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73876925	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7645367	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv829763	chr3:155417552-155470079	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155412600-155437400	Weak transcription	Pancreas	Pancrea
2	chr3:155413800-155432000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr3:155420200-155432200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:155423000-155431200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr3:155423200-155430200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:155423200-155431400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:155423200-155431400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:155423200-155432200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr3:155423400-155431200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr3:155423600-155430600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:155423600-155431000	Weak transcription	HepG2	liver
12	chr3:155426400-155431800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr3:155427600-155431000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr3:155428000-155431400	Weak transcription	Fetal Intestine Small	intestine
15	chr3:155429600-155430200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:155429600-155430200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:155429600-155430400	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:155429600-155430400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr3:155429800-155430200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr3:155429800-155430400	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr3:155430000-155430600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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