Variant report

Variant	rs16828690
Chromosome Location	chr1:179219792-179219793
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12121752	1.00[JPT][hapmap]
rs12128939	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12131503	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12139435	1.00[JPT][hapmap]
rs13306733	0.81[CHB][hapmap]
rs16853621	1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap]
rs2816203	0.85[LWK][hapmap]
rs28913881	1.00[EUR][1000 genomes]
rs28914519	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28914528	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.81[ASN][1000 genomes]
rs28914534	0.81[ASN][1000 genomes]
rs28991590	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28991593	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28991599	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs28991605	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs366922	1.00[ASN][1000 genomes]
rs3766620	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005278	chr1:179197645-179371395	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179218600-179225600	Weak transcription	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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