Variant report

Variant	rs366922
Chromosome Location	chr1:179254737-179254738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13306733	1.00[EUR][1000 genomes]
rs16828690	1.00[ASN][1000 genomes]
rs28913873	1.00[EUR][1000 genomes]
rs28914519	0.81[ASN][1000 genomes]
rs28914528	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28914534	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28991590	0.87[ASN][1000 genomes]
rs28991593	0.87[ASN][1000 genomes]
rs28991599	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28991605	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3766620	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005278	chr1:179197645-179371395	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179250800-179256600	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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