The 2.0 version of rSNPBase

Variant report

Variant rs28914519
Chromosome Location chr1:179100802-179100803
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:97 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179063200-179112000 Weak transcription Fetal Kidney kidney
2 chr1:179079600-179109800 Weak transcription Small Intestine intestine
3 chr1:179080200-179101600 Weak transcription Fetal Brain Male brain
4 chr1:179080400-179103800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
5 chr1:179086600-179105000 Weak transcription ES-WA7 Cell Line embryonic stem cell
6 chr1:179087800-179113000 Weak transcription Placenta Amnion Placenta Amnion
7 chr1:179088200-179102400 Weak transcription Brain Germinal Matrix brain
8 chr1:179090800-179104400 Weak transcription Fetal Brain Female brain
9 chr1:179091000-179108800 Weak transcription H9 Cell Line embryonic stem cell
10 chr1:179091000-179109000 Weak transcription ES-I3 Cell Line embryonic stem cell
11 chr1:179091000-179109200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
12 chr1:179093400-179117200 Weak transcription Fetal Stomach stomach
13 chr1:179095600-179101000 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
14 chr1:179095800-179101800 Weak transcription HUES6 Cell Line embryonic stem cell
15 chr1:179095800-179103600 Weak transcription Fetal Intestine Large intestine
16 chr1:179095800-179106800 Weak transcription Gastric stomach
17 chr1:179095800-179107400 Weak transcription H1 Cell Line embryonic stem cell
18 chr1:179096400-179108800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
19 chr1:179096600-179106800 Weak transcription Fetal Lung lung
20 chr1:179096600-179110200 Weak transcription Cortex derived primary cultured neurospheres brain
21 chr1:179097000-179101600 Genic enhancers HUVEC blood vessel
22 chr1:179098200-179112000 Weak transcription Lung lung
23 chr1:179098400-179101000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
24 chr1:179098800-179101000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr1:179098800-179101000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
26 chr1:179099200-179101000 Genic enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
27 chr1:179099200-179101200 Genic enhancers HSMM muscle
28 chr1:179099200-179110200 Weak transcription Primary hematopoietic stem cells blood
29 chr1:179099200-179110400 Weak transcription Brain Angular Gyrus brain
30 chr1:179099200-179110400 Weak transcription Brain Anterior Caudate brain
31 chr1:179099200-179114800 Weak transcription Brain Cingulate Gyrus brain
32 chr1:179099400-179101000 Strong transcription iPS-20b Cell Line embryonic stem cell
33 chr1:179099400-179101000 Genic enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
34 chr1:179099400-179101600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
35 chr1:179099400-179103400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
36 chr1:179099400-179106800 Weak transcription Pancreas Pancrea
37 chr1:179099400-179106800 Weak transcription Skeletal Muscle Male skeletal muscle
38 chr1:179099400-179106800 Weak transcription Skeletal Muscle Female skeletal muscle
39 chr1:179099400-179107000 Weak transcription Placenta Placenta
40 chr1:179099400-179110000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
41 chr1:179099400-179110400 Weak transcription Duodenum Smooth Muscle Duodenum
42 chr1:179099400-179112000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
43 chr1:179099400-179112000 Weak transcription Left Ventricle heart
44 chr1:179099600-179101400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
45 chr1:179099600-179101400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
46 chr1:179099600-179101400 Strong transcription Osteobl bone
47 chr1:179099600-179101600 Strong transcription Breast Myoepithelial Primary Cells Breast
48 chr1:179099600-179103400 Strong transcription NH-A brain
49 chr1:179099600-179103800 Weak transcription Fetal Adrenal Gland Adrenal Gland
50 chr1:179099600-179106800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung

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Last update: Aug 31, 2015