Variant report

Variant	rs28914534
Chromosome Location	chr1:179090374-179090375
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:179089949..179090868-chr1:179338641..179339706,4	K562	blood:
2	chr1:179089527..179090473-chr1:179261292..179262134,2	K562	blood:
3	chr1:179089981..179090796-chr1:179261194..179262105,4	MCF-7	breast:
4	chr1:179089774..179090886-chr1:179162674..179163404,6	MCF-7	breast:
5	chr1:179090050..179091036-chr1:179162610..179163623,8	MCF-7	breast:
6	chr1:179090099..179090850-chr1:179220628..179221510,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12116579	0.90[ASN][1000 genomes]
rs12121752	0.87[ASN][1000 genomes]
rs12124177	0.83[ASN][1000 genomes]
rs16828690	0.81[ASN][1000 genomes]
rs28913873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28913881	0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs28914519	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28914528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28991590	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs28991593	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs28991599	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28991605	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs366922	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3766620	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179053200-179096000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:179059200-179096400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr1:179059400-179090400	Strong transcription	HUVEC	blood vessel
4	chr1:179061400-179090400	Strong transcription	HSMM	muscle
5	chr1:179063200-179112000	Weak transcription	Fetal Kidney	kidney
6	chr1:179064800-179097800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr1:179071400-179090400	Strong transcription	NHDF-Ad	bronchial
8	chr1:179072000-179090400	Strong transcription	Osteobl	bone
9	chr1:179074200-179091000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:179075200-179091200	Strong transcription	NHLF	lung
11	chr1:179075400-179091000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:179075400-179091400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr1:179075400-179096200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr1:179076000-179090400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr1:179076200-179093400	Strong transcription	Fetal Stomach	stomach
16	chr1:179076400-179090400	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr1:179076400-179090400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:179076600-179092800	Strong transcription	NH-A	brain
19	chr1:179077200-179090600	Strong transcription	Muscle Satellite Cultured Cells	--
20	chr1:179077600-179094000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr1:179077800-179091000	Strong transcription	Adipose Nuclei	Adipose
22	chr1:179078000-179091200	Strong transcription	HSMMtube	muscle
23	chr1:179078200-179090600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr1:179078600-179097600	Weak transcription	Stomach Mucosa	stomach
25	chr1:179079600-179109800	Weak transcription	Small Intestine	intestine
26	chr1:179080000-179090400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr1:179080000-179090800	Weak transcription	Fetal Heart	heart
28	chr1:179080000-179090800	Weak transcription	Pancreas	Pancrea
29	chr1:179080000-179097800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr1:179080000-179097800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr1:179080000-179098600	Weak transcription	Esophagus	oesophagus
32	chr1:179080200-179095800	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr1:179080200-179101600	Weak transcription	Fetal Brain Male	brain
34	chr1:179080400-179103800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr1:179080800-179098400	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr1:179080800-179099000	Weak transcription	Colonic Mucosa	Colon
37	chr1:179080800-179099000	Weak transcription	Spleen	Spleen
38	chr1:179081600-179090400	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr1:179083200-179090800	Strong transcription	Fetal Brain Female	brain
40	chr1:179084000-179093200	Strong transcription	Fetal Intestine Large	intestine
41	chr1:179085000-179091000	Strong transcription	Primary T cells from cord blood	blood
42	chr1:179085000-179091000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr1:179085200-179094000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr1:179085400-179090400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr1:179085400-179090800	Strong transcription	Duodenum Mucosa	Duodenum
46	chr1:179085400-179091000	Strong transcription	Placenta	Placenta
47	chr1:179085400-179091200	Strong transcription	Fetal Muscle Trunk	muscle
48	chr1:179085400-179093200	Strong transcription	Fetal Muscle Leg	muscle
49	chr1:179085400-179095000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr1:179085800-179091000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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