Variant report

Variant	rs16828940
Chromosome Location	chr3:158092358-158092359
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:158085761..158087291-chr3:158090683..158093044,2	K562	blood:

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs10513524	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10513525	1.00[CEU][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1520659	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1595027	0.90[JPT][hapmap]
rs16828720	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16828727	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16828737	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16828740	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16828741	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16828746	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16828759	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16828767	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16828770	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16828774	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16828775	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16828778	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16828800	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16828808	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16828809	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16828841	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16828850	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16828887	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16828961	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16828966	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16828986	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16828988	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16828994	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16828996	0.82[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16828998	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16829044	0.91[JPT][hapmap]
rs16829064	0.91[JPT][hapmap]
rs16829102	0.90[JPT][hapmap]
rs16829105	0.90[JPT][hapmap]
rs1714520	0.90[JPT][hapmap]
rs1714522	0.90[JPT][hapmap]
rs1978780	0.91[JPT][hapmap]
rs2196357	0.90[JPT][hapmap]
rs2362248	1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4411841	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4536777	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4552311	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4635665	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55746917	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55879756	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56002119	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56024662	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56058155	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56106526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56138932	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56254920	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56286928	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56290300	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57386317	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57611848	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58277254	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58352503	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58896161	0.81[ASN][1000 genomes]
rs59024285	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59192297	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59344326	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59535842	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59903748	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59966175	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60175462	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60187224	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60364048	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60467343	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60531369	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60928655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61297176	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73874313	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73874314	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73874316	0.85[EUR][1000 genomes]
rs73874317	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73874320	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73874321	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73874322	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73874324	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73874327	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73874329	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73874331	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73874333	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73874334	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73874335	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73874336	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73874338	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73874345	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73874346	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73874347	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73874348	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73874350	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73874351	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73874356	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73874357	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73874371	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73874373	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73874377	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73874378	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73874380	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73874385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73874387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73874391	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73874397	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73874400	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73875326	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73877203	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73877204	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73877205	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73877206	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73877207	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73877209	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73877211	0.83[ASN][1000 genomes]
rs7434006	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013391	chr3:157505943-158115553	Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv536775	chr3:157505943-158115553	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv877689	chr3:157858930-158133307	Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv916910	chr3:157926799-158183372	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1014381	chr3:158070451-158350118	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv965124	chr3:158091529-158092882	Inactive region	Chromatin interactive region	n/a	n/a	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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