Variant report

Variant	rs16836381
Chromosome Location	chr1:154772547-154772548
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1395561	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55699206	1.00[AMR][1000 genomes]
rs6656385	1.00[AMR][1000 genomes]
rs6657775	1.00[AMR][1000 genomes]
rs6681539	1.00[AMR][1000 genomes]
rs6682049	1.00[AMR][1000 genomes]
rs6699247	1.00[AMR][1000 genomes]
rs6703251	1.00[AMR][1000 genomes]
rs73005428	1.00[AMR][1000 genomes]
rs73005429	1.00[AMR][1000 genomes]
rs73005493	1.00[AMR][1000 genomes]
rs73005497	1.00[AMR][1000 genomes]
rs73007703	1.00[AMR][1000 genomes]
rs74115892	1.00[AMR][1000 genomes]
rs74116261	1.00[AMR][1000 genomes]
rs74116267	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948413	chr1:153974621-154797272	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
2	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
3	nsv427797	chr1:154559115-154933717	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv470740	chr1:154568683-154796895	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv464050	chr1:154568683-154801247	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv547958	chr1:154568683-154801247	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154764600-154773800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr1:154764600-154778400	Weak transcription	Right Atrium	heart
3	chr1:154764600-154779400	Weak transcription	Spleen	Spleen
4	chr1:154764800-154782600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr1:154765000-154775200	Weak transcription	Brain Substantia Nigra	brain
6	chr1:154765600-154775600	Weak transcription	Brain Hippocampus Middle	brain
7	chr1:154765800-154775800	Weak transcription	Brain Anterior Caudate	brain
8	chr1:154769200-154773800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr1:154769400-154776000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr1:154771200-154773800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr1:154771800-154773200	Strong transcription	Fetal Brain Female	brain
12	chr1:154771800-154773200	Strong transcription	GM12878-XiMat	blood
13	chr1:154771800-154779200	Enhancers	Fetal Muscle Leg	muscle
14	chr1:154772200-154773200	Strong transcription	Fetal Stomach	stomach
15	chr1:154772200-154778000	Enhancers	Fetal Muscle Trunk	muscle
16	chr1:154772400-154772600	Enhancers	Right Ventricle	heart
17	chr1:154772400-154772800	Enhancers	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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