Variant report

Variant	rs74115892
Chromosome Location	chr1:154805041-154805042
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:154767850..154769379-chr1:154804804..154806305,2	K562	blood:
2	chr1:154803153..154805217-chr1:154813761..154815371,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1395561	1.00[AMR][1000 genomes]
rs16836381	1.00[AMR][1000 genomes]
rs55699206	1.00[AMR][1000 genomes]
rs6656385	1.00[AMR][1000 genomes]
rs6657775	1.00[AMR][1000 genomes]
rs6681539	1.00[AMR][1000 genomes]
rs6682049	1.00[AMR][1000 genomes]
rs6699247	1.00[AMR][1000 genomes]
rs6703251	1.00[AMR][1000 genomes]
rs73005428	1.00[AMR][1000 genomes]
rs73005429	1.00[AMR][1000 genomes]
rs73005493	1.00[AMR][1000 genomes]
rs73005497	1.00[AMR][1000 genomes]
rs73007703	1.00[AMR][1000 genomes]
rs74116261	1.00[AMR][1000 genomes]
rs74116267	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
2	nsv427797	chr1:154559115-154933717	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv432931	chr1:154794318-154855055	Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154787000-154805400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr1:154792800-154805800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:154802200-154805400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr1:154802200-154805800	Weak transcription	Psoas Muscle	Psoas
5	chr1:154803000-154806000	Weak transcription	Right Ventricle	heart
6	chr1:154803000-154809200	Enhancers	Colon Smooth Muscle	Colon
7	chr1:154803000-154810000	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr1:154803200-154807000	Enhancers	Rectal Smooth Muscle	rectum
9	chr1:154803200-154824600	Enhancers	Fetal Brain Male	brain
10	chr1:154803600-154805400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr1:154803600-154807000	Enhancers	Fetal Stomach	stomach
12	chr1:154803600-154809200	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr1:154803800-154807000	Enhancers	Fetal Muscle Leg	muscle
14	chr1:154803800-154809400	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr1:154804000-154807800	Enhancers	Left Ventricle	heart
16	chr1:154804200-154807400	Enhancers	Right Atrium	heart
17	chr1:154804400-154805600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr1:154804400-154805600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr1:154804400-154808000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr1:154804600-154806800	Enhancers	Brain Angular Gyrus	brain
21	chr1:154804600-154807200	Enhancers	Fetal Brain Female	brain
22	chr1:154804800-154805200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr1:154804800-154805400	Enhancers	Fetal Thymus	thymus
24	chr1:154804800-154805800	Weak transcription	Brain Hippocampus Middle	brain
25	chr1:154804800-154806400	Enhancers	GM12878-XiMat	blood
26	chr1:154804800-154807800	Enhancers	Brain Anterior Caudate	brain
27	chr1:154805000-154805400	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr1:154805000-154805400	Enhancers	Fetal Muscle Trunk	muscle
29	chr1:154805000-154805800	Weak transcription	Lung	lung
30	chr1:154805000-154806000	Weak transcription	Brain Substantia Nigra	brain

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