Variant report

Variant	rs73005497
Chromosome Location	chr1:154724674-154724675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:154719291..154722049-chr1:154723977..154728568,4	MCF-7	breast:
2	chr1:154721999..154724952-chr1:154768870..154770453,2	MCF-7	breast:
3	chr1:154672946..154674462-chr1:154723185..154725531,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1395561	1.00[AMR][1000 genomes]
rs16836381	1.00[AMR][1000 genomes]
rs55799808	1.00[AMR][1000 genomes]
rs6656385	1.00[AMR][1000 genomes]
rs6657775	1.00[AMR][1000 genomes]
rs6681539	1.00[AMR][1000 genomes]
rs6682049	1.00[AMR][1000 genomes]
rs6699247	1.00[AMR][1000 genomes]
rs6703251	1.00[AMR][1000 genomes]
rs73005428	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73005429	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73005493	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73007703	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74115892	1.00[AMR][1000 genomes]
rs74116261	1.00[AMR][1000 genomes]
rs74116267	1.00[AMR][1000 genomes]
rs74119104	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948413	chr1:153974621-154797272	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
2	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
3	nsv427797	chr1:154559115-154933717	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv470740	chr1:154568683-154796895	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv464050	chr1:154568683-154801247	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv547958	chr1:154568683-154801247	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154715800-154725200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr1:154717000-154732800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:154718000-154727600	Weak transcription	Psoas Muscle	Psoas
4	chr1:154720600-154731600	Weak transcription	Spleen	Spleen
5	chr1:154720800-154726000	Enhancers	Fetal Thymus	thymus
6	chr1:154720800-154728800	Weak transcription	Lung	lung
7	chr1:154721000-154725000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr1:154721600-154728400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr1:154723200-154725000	Enhancers	Fetal Brain Male	brain
10	chr1:154723200-154725200	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr1:154723600-154725200	Enhancers	Fetal Stomach	stomach
12	chr1:154723600-154725400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr1:154723800-154724800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:154723800-154724800	Enhancers	Brain Anterior Caudate	brain
15	chr1:154723800-154724800	Enhancers	Brain Cingulate Gyrus	brain
16	chr1:154723800-154724800	Enhancers	Brain Hippocampus Middle	brain
17	chr1:154723800-154725000	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr1:154723800-154725000	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr1:154724200-154726800	Weak transcription	GM12878-XiMat	blood
20	chr1:154724200-154727400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr1:154724200-154731400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr1:154724200-154731600	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr1:154724200-154732800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr1:154724400-154732800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr1:154724600-154724800	Weak transcription	Fetal Muscle Leg	muscle
26	chr1:154724600-154725400	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr1:154724600-154727800	Weak transcription	Primary T cells from cord blood	blood
28	chr1:154724600-154729600	Weak transcription	Brain Germinal Matrix	brain
29	chr1:154724600-154732800	Weak transcription	Fetal Brain Female	brain

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