Variant report

Variant	rs6656385
Chromosome Location	chr1:154684444-154684445
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:154670332..154672322-chr1:154683314..154685505,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1395561	1.00[AMR][1000 genomes]
rs16836381	1.00[AMR][1000 genomes]
rs55799808	1.00[AMR][1000 genomes]
rs6657775	1.00[AMR][1000 genomes]
rs6681539	1.00[AMR][1000 genomes]
rs6682049	1.00[AMR][1000 genomes]
rs6699247	1.00[AMR][1000 genomes]
rs6703251	1.00[AMR][1000 genomes]
rs73005428	1.00[AMR][1000 genomes]
rs73005429	1.00[AMR][1000 genomes]
rs73005493	1.00[AMR][1000 genomes]
rs73005497	1.00[AMR][1000 genomes]
rs73007703	1.00[AMR][1000 genomes]
rs74115892	1.00[AMR][1000 genomes]
rs74119104	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948413	chr1:153974621-154797272	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
2	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
3	nsv427797	chr1:154559115-154933717	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv470740	chr1:154568683-154796895	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv464050	chr1:154568683-154801247	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv547958	chr1:154568683-154801247	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154668600-154685400	Weak transcription	Brain Anterior Caudate	brain
2	chr1:154671400-154684800	Weak transcription	GM12878-XiMat	blood
3	chr1:154674200-154686400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:154674400-154686400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr1:154677200-154685000	Weak transcription	Brain Germinal Matrix	brain
6	chr1:154677400-154698600	Weak transcription	Brain Hippocampus Middle	brain
7	chr1:154677800-154684800	Weak transcription	Spleen	Spleen
8	chr1:154678400-154685400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:154679000-154685400	Weak transcription	Brain Angular Gyrus	brain
10	chr1:154680000-154687000	Strong transcription	Fetal Muscle Leg	muscle
11	chr1:154680000-154687200	Strong transcription	Fetal Stomach	stomach
12	chr1:154680600-154686600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr1:154680600-154686600	Weak transcription	Right Atrium	heart
14	chr1:154680600-154696400	Weak transcription	Left Ventricle	heart
15	chr1:154681400-154686600	Weak transcription	Fetal Lung	lung
16	chr1:154682400-154686600	Weak transcription	Colon Smooth Muscle	Colon
17	chr1:154682800-154685800	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr1:154683000-154684600	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr1:154683000-154685000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr1:154683000-154685400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr1:154683000-154686200	Weak transcription	Brain Substantia Nigra	brain
22	chr1:154683000-154686400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr1:154683000-154692200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr1:154683000-154699200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr1:154683200-154684600	Weak transcription	Fetal Muscle Trunk	muscle
26	chr1:154683200-154686400	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr1:154683200-154686400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr1:154683400-154686400	Weak transcription	HSMMtube	muscle
29	chr1:154683800-154685000	Enhancers	Placenta	Placenta
30	chr1:154684000-154687000	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr1:154684200-154684800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr1:154684200-154685000	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr1:154684200-154686800	Strong transcription	Duodenum Smooth Muscle	Duodenum
34	chr1:154684400-154684600	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
35	chr1:154684400-154684800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr1:154684400-154684800	Weak transcription	Stomach Smooth Muscle	stomach
37	chr1:154684400-154685600	Enhancers	Fetal Brain Female	brain
38	chr1:154684400-154688600	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links