Variant report

Variant	rs16841561
Chromosome Location	chr3:99362069-99362070
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1567784	0.92[AMR][1000 genomes]
rs16841568	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1818482	0.92[AMR][1000 genomes]
rs3732447	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3755596	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3755597	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3755599	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4928205	0.82[AMR][1000 genomes]
rs4928206	0.85[AMR][1000 genomes]
rs4928212	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4928213	1.00[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56773086	0.92[AMR][1000 genomes]
rs58846871	0.87[AMR][1000 genomes]
rs72928493	0.82[AMR][1000 genomes]
rs72928498	0.87[AMR][1000 genomes]
rs72930350	0.92[AMR][1000 genomes]
rs72930363	0.92[AMR][1000 genomes]
rs72930368	0.92[AMR][1000 genomes]
rs72930370	0.92[AMR][1000 genomes]
rs72932305	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs72932315	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99357600-99363800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:99357800-99363400	Weak transcription	Brain Hippocampus Middle	brain
3	chr3:99358000-99363200	Weak transcription	Brain Anterior Caudate	brain
4	chr3:99358000-99363600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr3:99358000-99363800	Weak transcription	Ovary	ovary
6	chr3:99358000-99364000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:99358000-99369400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:99358200-99362600	Weak transcription	Colon Smooth Muscle	Colon
9	chr3:99358200-99363600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr3:99358800-99364200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr3:99359200-99362800	Weak transcription	HSMMtube	muscle
12	chr3:99359200-99363000	Transcr. at gene 5' and 3'	HUVEC	blood vessel
13	chr3:99359600-99362600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:99359800-99363000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr3:99359800-99364800	Genic enhancers	HSMM	muscle
16	chr3:99360000-99363800	Weak transcription	Adipose Nuclei	Adipose
17	chr3:99360000-99370200	Weak transcription	Right Atrium	heart
18	chr3:99360200-99363200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:99360200-99363800	Weak transcription	HMEC	breast
20	chr3:99360600-99362600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:99360600-99363800	Weak transcription	Stomach Smooth Muscle	stomach
22	chr3:99360600-99364400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr3:99360800-99363000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr3:99361200-99362200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr3:99361200-99363000	Enhancers	NHDF-Ad	bronchial
26	chr3:99361200-99364400	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr3:99361200-99364400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr3:99361200-99364600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr3:99361200-99366200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr3:99361200-99366600	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr3:99361400-99364000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr3:99361400-99364000	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr3:99361400-99364800	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr3:99361400-99364800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr3:99361600-99362600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr3:99361600-99362600	Genic enhancers	Osteobl	bone
37	chr3:99361600-99364600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr3:99361600-99366600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr3:99361800-99362200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr3:99362000-99362200	Transcr. at gene 5' and 3'	Aorta	Aorta
41	chr3:99362000-99362200	Enhancers	NHLF	lung
42	chr3:99362000-99362800	Genic enhancers	NH-A	brain
43	chr3:99362000-99364200	Enhancers	NHEK	skin
44	chr3:99362000-99365200	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--

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