Variant report

Variant	rs72932305
Chromosome Location	chr3:99353399-99353400
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr3:99352774-99353474	ECC-1	luminal epithelium:	n/a	chr3:99353125-99353134 chr3:99353126-99353135

Variant related genes	Relation type
COL8A1	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1355764	0.91[ASN][1000 genomes]
rs1567784	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16841441	0.91[ASN][1000 genomes]
rs16841561	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs16841568	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs1818482	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3732447	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3755596	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3755597	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3755599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4928205	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4928206	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4928211	0.93[ASN][1000 genomes]
rs4928212	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4928213	0.83[AMR][1000 genomes]
rs56773086	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56905184	0.91[ASN][1000 genomes]
rs58846871	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67340958	0.93[ASN][1000 genomes]
rs6780095	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72928493	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72928498	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72930350	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72930363	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72930368	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72930370	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72932315	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs7613174	0.93[ASN][1000 genomes]
rs952924	0.93[ASN][1000 genomes]
rs9682709	0.90[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99346400-99355800	Weak transcription	Hela-S3	cervix
2	chr3:99347200-99355800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:99349800-99354000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr3:99350200-99353800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:99350400-99354000	Weak transcription	HMEC	breast
6	chr3:99350600-99354400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr3:99351400-99353600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr3:99351400-99355200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr3:99351600-99353600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr3:99351800-99353400	Enhancers	Fetal Intestine Large	intestine
11	chr3:99351800-99354200	Enhancers	H9 Cell Line	embryonic stem cell
12	chr3:99352000-99354400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr3:99352000-99354800	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr3:99352200-99353800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr3:99352200-99353800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr3:99352200-99354200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr3:99352400-99355400	Enhancers	HUVEC	blood vessel
18	chr3:99352600-99353600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr3:99352600-99354200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr3:99352600-99354800	Enhancers	NH-A	brain
21	chr3:99352800-99353400	Enhancers	Muscle Satellite Cultured Cells	--
22	chr3:99352800-99353400	Enhancers	NHEK	skin
23	chr3:99352800-99353600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:99352800-99353800	Enhancers	Aorta	Aorta
25	chr3:99352800-99354000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:99352800-99354600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr3:99352800-99355800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr3:99353000-99353400	Weak transcription	NHLF	lung
29	chr3:99353200-99354200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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