Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1355764	0.83[ASN][1000 genomes]
rs1567784	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16841441	0.83[ASN][1000 genomes]
rs1818482	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3732447	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3755597	0.83[EUR][1000 genomes]
rs3755599	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4928205	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4928206	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4928211	0.84[ASN][1000 genomes]
rs56773086	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56905184	0.83[ASN][1000 genomes]
rs58846871	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67340958	0.84[ASN][1000 genomes]
rs72928493	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72928498	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72930350	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72930363	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72930368	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72930370	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72932305	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7613174	0.84[ASN][1000 genomes]
rs952924	0.84[ASN][1000 genomes]
rs9682709	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99329600-99333200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search: