Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:99325508..99327428-chr3:99330801..99332344,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1355764	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1567784	0.96[ASN][1000 genomes]
rs16841441	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1818482	0.96[ASN][1000 genomes]
rs3755596	0.80[ASN][1000 genomes]
rs3755597	0.80[ASN][1000 genomes]
rs3755599	0.80[ASN][1000 genomes]
rs4928205	0.90[ASN][1000 genomes]
rs4928206	0.90[ASN][1000 genomes]
rs4928211	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56773086	0.96[ASN][1000 genomes]
rs56905184	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58846871	0.90[ASN][1000 genomes]
rs6780095	0.84[ASN][1000 genomes]
rs72928493	0.90[ASN][1000 genomes]
rs72928498	0.90[ASN][1000 genomes]
rs72930350	0.96[ASN][1000 genomes]
rs72930363	0.96[ASN][1000 genomes]
rs72930368	0.96[ASN][1000 genomes]
rs72930370	0.96[ASN][1000 genomes]
rs72932305	0.93[ASN][1000 genomes]
rs7613174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs952924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9682709	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99325600-99326400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search: