Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-COL8A1-1	chr3:99340796-99342664	ENSG00000244464

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1355764	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1567784	0.94[ASN][1000 genomes]
rs16841441	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1818482	0.94[ASN][1000 genomes]
rs4928205	0.89[ASN][1000 genomes]
rs4928206	0.89[ASN][1000 genomes]
rs4928211	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56773086	0.94[ASN][1000 genomes]
rs58846871	0.89[ASN][1000 genomes]
rs67340958	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6780095	0.83[ASN][1000 genomes]
rs72928493	0.89[ASN][1000 genomes]
rs72928498	0.89[ASN][1000 genomes]
rs72930350	0.94[ASN][1000 genomes]
rs72930363	0.94[ASN][1000 genomes]
rs72930368	0.94[ASN][1000 genomes]
rs72930370	0.94[ASN][1000 genomes]
rs72932305	0.91[ASN][1000 genomes]
rs7613174	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs952924	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9682709	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99333600-99345800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:99339000-99341400	Enhancers	HUVEC	blood vessel
3	chr3:99339200-99343600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr3:99340400-99344200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:99340400-99346000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:99340600-99344000	Weak transcription	NHDF-Ad	bronchial
7	chr3:99340800-99343000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:99341000-99343400	Weak transcription	Hela-S3	cervix
9	chr3:99341000-99352800	Weak transcription	Aorta	Aorta

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