Variant report

Variant	rs58846871
Chromosome Location	chr3:99305630-99305631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1355764	0.89[ASN][1000 genomes]
rs1567784	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16841441	0.89[ASN][1000 genomes]
rs16841561	0.87[AMR][1000 genomes]
rs16841568	0.87[AMR][1000 genomes]
rs1818482	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3732447	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3755596	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3755597	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3755599	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4928205	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4928206	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4928211	0.90[ASN][1000 genomes]
rs4928212	0.87[AMR][1000 genomes]
rs56773086	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56905184	0.89[ASN][1000 genomes]
rs67340958	0.90[ASN][1000 genomes]
rs6780095	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72928493	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72928498	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72930350	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72930363	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72930368	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72930370	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72932305	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72932315	0.87[AMR][1000 genomes]
rs7613174	0.90[ASN][1000 genomes]
rs952924	0.90[ASN][1000 genomes]
rs9682709	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99305200-99306200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr3:99305200-99306800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr3:99305400-99305800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr3:99305400-99305800	Enhancers	NH-A	brain
5	chr3:99305400-99306000	Flanking Active TSS	NHDF-Ad	bronchial
6	chr3:99305400-99306000	Flanking Active TSS	Osteobl	bone
7	chr3:99305400-99306200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:99305400-99306200	Enhancers	HSMMtube	muscle
9	chr3:99305400-99306800	Enhancers	HSMM	muscle
10	chr3:99305600-99305800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:99305600-99306200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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