Variant report

Variant	rs16841568
Chromosome Location	chr3:99364270-99364271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:99363901..99364505-chr3:99472181..99472859,2	K562	blood:
2	chr3:99363894..99365328-chr3:99405551..99406620,7	MCF-7	breast:
3	chr3:99363825..99364826-chr3:99507909..99508677,3	MCF-7	breast:
4	chr3:99363982..99364505-chr3:99405611..99406129,2	MCF-7	breast:
5	chr3:99363705..99364768-chr3:99471880..99472933,4	MCF-7	breast:
6	chr3:99218147..99219010-chr3:99363822..99364695,3	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1567784	0.92[AMR][1000 genomes]
rs16841561	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1818482	0.92[AMR][1000 genomes]
rs3732447	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3755596	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3755597	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3755599	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4928205	0.82[AMR][1000 genomes]
rs4928206	0.85[AMR][1000 genomes]
rs4928212	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4928213	1.00[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56773086	0.92[AMR][1000 genomes]
rs58846871	0.87[AMR][1000 genomes]
rs72928493	0.82[AMR][1000 genomes]
rs72928498	0.87[AMR][1000 genomes]
rs72930350	0.92[AMR][1000 genomes]
rs72930363	0.92[AMR][1000 genomes]
rs72930368	0.92[AMR][1000 genomes]
rs72930370	0.92[AMR][1000 genomes]
rs72932305	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs72932315	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99358000-99369400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:99359800-99364800	Genic enhancers	HSMM	muscle
3	chr3:99360000-99370200	Weak transcription	Right Atrium	heart
4	chr3:99360600-99364400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:99361200-99364400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:99361200-99364400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr3:99361200-99364600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:99361200-99366200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:99361200-99366600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr3:99361400-99364800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr3:99361400-99364800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:99361600-99364600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr3:99361600-99366600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr3:99362000-99365200	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
15	chr3:99362200-99364800	Active TSS	Aorta	Aorta
16	chr3:99362600-99367600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:99362600-99368800	Enhancers	Colon Smooth Muscle	Colon
18	chr3:99362800-99365000	Enhancers	Brain Germinal Matrix	brain
19	chr3:99362800-99365000	Enhancers	Rectal Smooth Muscle	rectum
20	chr3:99362800-99369200	Enhancers	NHLF	lung
21	chr3:99363000-99364400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:99363000-99365600	Genic enhancers	Osteobl	bone
23	chr3:99363200-99364400	Enhancers	Brain Anterior Caudate	brain
24	chr3:99363200-99367400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr3:99363400-99364400	Enhancers	Brain Hippocampus Middle	brain
26	chr3:99363400-99364600	Weak transcription	HSMMtube	muscle
27	chr3:99363400-99364800	Transcr. at gene 5' and 3'	HUVEC	blood vessel
28	chr3:99363600-99364400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr3:99363600-99364400	Enhancers	Brain Cingulate Gyrus	brain
30	chr3:99363600-99364400	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr3:99363600-99364600	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr3:99363600-99364600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr3:99363600-99365000	Enhancers	Brain Substantia Nigra	brain
34	chr3:99363600-99365000	Enhancers	Fetal Muscle Leg	muscle
35	chr3:99363600-99365400	Enhancers	Fetal Stomach	stomach
36	chr3:99363800-99365400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr3:99363800-99365600	Enhancers	Stomach Smooth Muscle	stomach
38	chr3:99363800-99366600	Enhancers	NH-A	brain
39	chr3:99363800-99367800	Enhancers	HMEC	breast
40	chr3:99363800-99369000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr3:99364000-99364400	Weak transcription	Adipose Nuclei	Adipose
42	chr3:99364000-99364600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr3:99364000-99364800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr3:99364000-99365200	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr3:99364000-99365200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr3:99364000-99365400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr3:99364000-99367000	Enhancers	NHDF-Ad	bronchial
48	chr3:99364000-99370200	Weak transcription	Ovary	ovary
49	chr3:99364200-99364400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr3:99364200-99364400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin

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