Variant report

Variant	rs16844202
Chromosome Location	chr2:141297248-141297249
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13419625	1.00[CEU][hapmap]
rs1485846	1.00[CEU][hapmap]
rs16844161	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16844168	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs16844171	0.83[EUR][1000 genomes]
rs16844174	0.83[EUR][1000 genomes]
rs16844177	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16844178	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16844181	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16844186	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16844189	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16844198	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16844206	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16844234	0.83[AMR][1000 genomes]
rs16844252	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs16844253	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17591870	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv962117	chr2:141296712-141299620	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141296600-141297400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:141296800-141297400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:141297200-141297400	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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