Variant report

Variant	rs17591870
Chromosome Location	chr2:141296109-141296110
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:141295151..141297783-chr2:141298747..141300917,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10496845	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13398598	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13414459	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13414650	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13419625	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16844157	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16844161	0.83[AMR][1000 genomes]
rs16844168	0.82[EUR][1000 genomes]
rs16844171	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16844174	0.82[EUR][1000 genomes]
rs16844175	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16844177	0.83[AMR][1000 genomes]
rs16844178	0.83[AMR][1000 genomes]
rs16844181	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16844186	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16844189	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16844198	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16844202	0.83[AMR][1000 genomes]
rs16844206	0.87[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16844232	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16844236	1.00[ASN][1000 genomes]
rs16844240	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs16844253	0.83[AMR][1000 genomes]
rs16844259	1.00[JPT][hapmap]
rs16856029	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9287534	1.00[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141287600-141297200	Weak transcription	Brain Substantia Nigra	brain
2	chr2:141294200-141297000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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